| TextSentencer | sentence segmentation | |
| PubTator-Species | To pull the pre-computed Species annotation from PubTator. | |
| PubTator-Mutation | To pull the pre-computed mutation annotation from PubTator. | |
| PubTator-Gene | To pull the pre-computed gene annotation from PubTator. | |
| PubTator-Disease | To pull the pre-computed disease annotation from PubTator. | |
| PubTator-Chemical | To pull the pre-computed chemical annotation from PubTator. | |
| PubTator | PubTator annotation provided by NCBI | |
| PD-UBERON-AE-B | It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents. | |
| PD-UBERON-AE-2023 | It annotates for anatomical entities, based on the UBERON-AE-2023 dictionary on PubDictionaries. Threshold is set to 0.85. | |
| PD-UBERON-AE | It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85. | |
