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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
GlyCosmos15Collection of annotations to the abstracts from the following journals: Analytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports 2024-09-19
Projects
Name TDescription# Ann.Updated atStatus
71-80 / 161 show all
hydroxychloroquine2.59 K2023-11-29Developing
ICD10Annotation for disease names as defined in ICD101.6 K2023-11-29Developing
KoreanFN-exampleKorean FrameNet example62023-11-29Developing
LitCoin-entities13.6 K2023-11-29Testing
LitCoin-entities-OrganismTaxon-PD9492023-11-27Testing
LitCoin-GeneOrGeneProduct-v0https://pubdictionaries.org/text_annotation.json?dictionary=NCBIGene-NER&threshold=0.85&abbreviation=true15.8 K2023-11-29
LitCoin-GeneOrGeneProduct-v2threshold = 0.938.98 K2023-11-29
LitCoin-GeneOrGeneProduct-v3GeneOrGeneProduct after false positive control4.67 K2023-11-24
LitCoin-PubTator-for-TuningA set of randomly selected PubMed articles with PubTator annotation. The labels of PubTator annotations are converted to corresponding labels for LitCoin as follows: 'Gene' -> 'GeneOrGeneProduct', 'Disease' -> 'DiseaseOrPhenotypicFeature', 'Chemical' -> 'ChemicalEntity' 'Species' -> 'OrganismTaxon' 'Mutation' -> 'SequenceVariant' 'CellLine' -> 'CellLine'14.2 K2023-11-29
LitCoin-sentences4.94 K2023-11-29Testing
Automatic annotators
Name Description
31-40 / 40 show all
PD-FMA-PAEPhysical Anatomical Entities from FMA
PD-CLO-B
PD-CLO
PD-CHEBI-B
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
Glycan-Motif-Image
Glycan-Image
Glycan-GlyCosmos
EnjuParserEnju HPSG Parser developed by University of Tokyo.
discourse-simplifierA discourse analyzer developed by Univ. Manchester.
Editors
Name Description
1-1 / 1
TextAEThe official stable version of TextAE.