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Jin-Dong Kim
User info
Collections
NameDescriptionUpdated at
11-12 / 12 show all
LitCoin-Test2021-12-23
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
Projects
Name TDescription# Ann.Updated atStatus
121-130 / 158 show all
MENA-example52023-11-29
MENA-example232023-11-24Testing
metamap-sampleSample annotation of MetaMep, produced by Aronson, et al. An overview of MetaMap: historical perspective and recent advances, JAMIA 201010.9 K2023-11-27Testing
mondo_diseaseannotation for diseases and disorders as defined in MONDO. Automatic annotation by PD-MONDO.256 K2023-11-28Developing
MyTest9.81 M2023-11-24Testing
NCBITAXONannotation for NCBI taxonomy. Automatic annotation by PD-NCBITaxon.502 K2023-11-24Developing
NGLY1-deficiencyA collection of PubMed abstracts that may be related to NGLY1 deficiency.60.5 K2023-11-29Developing
Parkinson542023-11-28Testing
performance-testa project for performance test480 K2023-11-27Testing
pmc-enju-pasPredicate-argument structure annotation produced by Enju. This data set is initially produced as a supporting resource for BioNLP-ST 2016 GE task. As so, it currently includes the 34 full paper articles that are in the benchmark data sets of GE 2016 task, reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test), but will be extended to include more papers from the PubMed Central Open Access subset (PMCOA). 205 K2023-11-28Developing
Automatic annotators
Name Description
31-40 / 40 show all
PD-FMA-PAEPhysical Anatomical Entities from FMA
PD-CLO-B
PD-CLO
PD-CHEBI-B
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
Glycan-Motif-Image
Glycan-Image
Glycan-GlyCosmos
EnjuParserEnju HPSG Parser developed by University of Tokyo.
discourse-simplifierA discourse analyzer developed by Univ. Manchester.
Editors
Name Description
1-1 / 1
TextAEThe official stable version of TextAE.