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Jin-Dong Kim
User info
Collections
NameDescriptionUpdated at
11-12 / 12 show all
LitCoin-Test2021-12-23
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
Projects
Name TDescription# Ann.Updated atStatus
131-140 / 158 show all
Preeclampsia-compare67.2 K2023-11-29Testing
preeclampsia_genes17.8 K2023-11-29Developing
PubCasesCollectionabstracts in PubCases02023-11-29
PubMed-2000abstracts published in 2000.02023-11-29Developing
pubmed-2016abstracts published in 201602023-11-28
PubMed-2017abstracts published in 2017.02023-11-24Developing
pubmed-enju-pasAnnotating PubMed abstracts for predicate-argument structure (PAS). Enju 2.4.2 is used to automatically compute PAS.19.1 M2023-11-24Developing
PubMed-French-testA collection of PubMed abstract written in French02023-11-29Developing
PubMed-German-testA collection of PubMed abstracts which are written in German02023-11-24Developing
pubmed-sentences-benchmarkA benchmark data for text segmentation into sentences. The source of annotation is the GENIA treebank v1.0. Following is the process taken. began with the GENIA treebank v1.0. sentence annotations were extracted and converted to PubAnnotation JSON. uploaded. 12 abstracts met alignment failure. among the 12 failure cases, 4 had a dot('.') character where there should be colon (':'). They were manually fixed then successfully uploaded: 7903907, 8053950, 8508358, 9415639. among the 12 failed abstracts, 8 were "250 word truncation" cases. They were manually fixed and successfully uploaded. During the fixing, manual annotations were added for the missing pieces of text. 30 abstracts had extra text in the end, indicating copyright statement, e.g., "Copyright 1998 Academic Press." They were annotated as a sentence in GTB. However, the text did not exist anymore in PubMed. Therefore, the extra texts were removed, together with the sentence annotation to them. 18.4 K2023-11-28Released
Automatic annotators
Name Description
21-30 / 39 show all
PD-HP-B
PD-HP
PD-GO-BP-BBiological Processes as defined in GO
PD-GlycoProteins-B
PD-GlycoGenes-B
PD-GlycoGenes20190927-B
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
PD-GlycoEpitope
PD-GlycanStructures-B
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
Editors
NameDescription
1-1 / 1
TextAEThe official stable version of TextAE.