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Jin-Dong Kim
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Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameTDescription# Ann.Updated atStatus
71-80 / 158 show all
semrep-sampleSample annotation of SemRep, produced by Rindflesch, et al. Rindflesch, T.C. and Fiszman, M. (2003). The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. Journal of Biomedical Informatics, 36(6):462-477.11.1 K2023-11-29Testing
example-dialog02023-11-27Testing
GO-BPAnnotation for biological processes as defined in the "Biological Process" subset of Gene Ontology35.4 K2023-11-29Developing
LitCovid-PD-GlycoEpitope9992023-11-29Developing
CORD-19-sample-HP392023-11-27Developing
LitCovid-manual5402023-11-30Developing
ICD10Annotation for disease names as defined in ICD101.6 K2023-11-29Developing
pmc-enju-pasPredicate-argument structure annotation produced by Enju. This data set is initially produced as a supporting resource for BioNLP-ST 2016 GE task. As so, it currently includes the 34 full paper articles that are in the benchmark data sets of GE 2016 task, reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test), but will be extended to include more papers from the PubMed Central Open Access subset (PMCOA). 205 K2023-11-28Developing
uniprot-mouseProtein annotation based on UniProt11.5 K2023-11-28Developing
GlyCosmosP-Glycan-Motif82023-11-24Developing
Automatic annotators
Name Description
11-20 / 40 show all
PD-Preeclampsia-B
PD-NGLY1-deficiency-BA batch annotator for NGLY1 deficiency
PD-NCBITaxon-B
PD-NCBITaxon
PD-NCBIGene
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
PD-MONDOPubDictionaries annotation with the MONDO dictionary.
PD-MAT
PD-HP-PA-B
PD-HP-PA
Editors
NameDescription
1-1 / 1
TextAEThe official stable version of TextAE.