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Jin-Dong Kim
User info
Collections
NameDescriptionUpdated at
11-12 / 12 show all
LitCoin-Test2021-12-23
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
Projects
Name TDescription# Ann.Updated atStatus
111-120 / 160 show all
GlyCosmos600-GlycoGenes872023-11-28Testing
GlyCosmos600-GlycoEpitope2772023-11-27Testing
GlyCosmos600-GlycanStructure972023-11-29Testing
GlyCosmos600-Glycan-Motif-Structure9192023-11-29Developing
GlyCosmos600-FMA7.12 K2023-11-29
GlyCosmos600-docsA random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.02023-11-29Released
GlyCosmos600-CLO1.73 K2023-11-28Testing
GlycoGenesannotation for glyco-genes based on GGDB1.01 K2023-11-29Developing
glycogenes2.75 K2023-11-30Testing
GlycoConjugate-collectionThe PubMed entries (titles and abstracts) from the journal of GlycoConjugate02023-11-28Developing
Automatic annotators
Name Description
1-10 / 39 show all
discourse-simplifierA discourse analyzer developed by Univ. Manchester.
EnjuParserEnju HPSG Parser developed by University of Tokyo.
Glycan-Image
Glycan-Motif-Image
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
PD-CHEBI-B
PD-CLO
PD-CLO-B
PD-FMA-PAEPhysical Anatomical Entities from FMA
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.