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Jin-Dong Kim
User info
Collections
NameDescriptionUpdated at
11-12 / 12 show all
LitCoin-Test2021-12-23
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
Projects
NameTDescription# Ann.Updated atStatus
131-140 / 160 show all
GlyCosmosP-Glycan-Motif82023-11-24Developing
MENA-example232023-11-24Testing
Glycosmos6-GlycoEpitopeAutomatic annotation by PD-GlycoEpitope.19.9 K2023-11-28Developing
GlyCosmos6-UBERON689 K2023-12-15Developing
GlyCosmos6-Glycan-Motif-StructureAutomatic annotation by Covid-19_Glycan-Motif.107 K2023-11-24Developing
NCBITAXONannotation for NCBI taxonomy. Automatic annotation by PD-NCBITaxon.502 K2023-11-24Developing
MyTest9.81 M2023-11-24Testing
LitCovid-sentences5.63 M2023-11-24Developing
CORD-19_Custom_license_subsetThe Custom license subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.5.08 M2023-11-24Released
CORD-19-PD-UBERONPubDictionaries annotation for UBERON terms - updated at 2020-04-30 It is disease term annotation based on Uberon. The terms in Uberon are uploaded in PubDictionaries (Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved.1.42 M2023-11-24Released
Automatic annotators
Name Description
1-10 / 39 show all
discourse-simplifierA discourse analyzer developed by Univ. Manchester.
EnjuParserEnju HPSG Parser developed by University of Tokyo.
Glycan-Image
Glycan-Motif-Image
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
PD-CHEBI-B
PD-CLO
PD-CLO-B
PD-FMA-PAEPhysical Anatomical Entities from FMA
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.