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Jin-Dong Kim
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Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameT Description# Ann.Updated atStatus
61-70 / 160 show all
CORD-19-sample-sentences1612023-11-27Developing
LitCovid-sample-PD-MONDO1.21 K2023-11-27Developing
LitCovid-docs-s02023-11-29Released
MENA-example52023-11-29
PubCasesCollectionabstracts in PubCases02023-11-29
GlyCosmos600-MAT8632023-11-29Testing
EDAM-topicsannotation for EDAM topics11.6 K2023-11-29Testing
GlycoBiology-FMAFMA ontology-based annotation to GlycoBiology abstracts96.3 K2023-11-29Testing
LitCoin-GeneOrGeneProduct-v2threshold = 0.938.98 K2023-11-29
Test-merged3.21 K2023-11-29
Automatic annotators
Name Description
1-10 / 39 show all
discourse-simplifierA discourse analyzer developed by Univ. Manchester.
EnjuParserEnju HPSG Parser developed by University of Tokyo.
Glycan-Image
Glycan-Motif-Image
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
PD-CHEBI-B
PD-CLO
PD-CLO-B
PD-FMA-PAEPhysical Anatomical Entities from FMA
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.