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Jin-Dong Kim
User info
Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameTDescription# Ann. Updated atStatus
131-140 / 160 show all
MENA-example232023-11-24Testing
epi-statement-test22023-11-30Testing
LitCovid-sample-PD-GlycoEpitope12023-11-27Developing
Test-Documents12023-11-24
PubMed-2000abstracts published in 2000.02023-11-29Developing
pubmed-2016abstracts published in 201602023-11-28
test_disfluency_annotation_auto_jp02023-12-28Testing
GlyCosmos600-docsA random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.02023-11-29Released
GlycoConjugate-collectionThe PubMed entries (titles and abstracts) from the journal of GlycoConjugate02023-11-28Developing
example-dialog02023-11-27Testing
Automatic annotators
Name Description
1-10 / 39 show all
discourse-simplifierA discourse analyzer developed by Univ. Manchester.
EnjuParserEnju HPSG Parser developed by University of Tokyo.
Glycan-Image
Glycan-Motif-Image
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
PD-CHEBI-B
PD-CLO
PD-CLO-B
PD-FMA-PAEPhysical Anatomical Entities from FMA
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
Editors
NameDescription
1-2 / 2
TextAETextAE version 5, which enables edition of attributes of denotations.
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.