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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-12 / 12 show all
LitCoin-Test2021-12-23
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
Projects
NameTDescription# Ann.Updated at Status
41-50 / 160 show all
PubMed-2000abstracts published in 2000.02023-11-29Developing
PubCasesCollectionabstracts in PubCases02023-11-29
glycobiology-test272023-11-29Developing
KoreanFN-exampleKorean FrameNet example62023-11-29Developing
LitCovid-sample-Enju13.1 K2023-11-29Developing
hydroxychloroquine2.59 K2023-11-29Developing
ICD10Annotation for disease names as defined in ICD101.6 K2023-11-29Developing
MENA-example52023-11-29
GlyCosmos600-MAT8632023-11-29Testing
UBERON-AEAnnotation for anatomical entities based on the "Anatomical Entity" subtree of UBERON ontology. Annotations are automatically produced using PubDictionaries with threshold: 0.85.859 K2023-11-29Developing
Automatic annotators
Name Description
21-30 / 39 show all
PD-HP-PA-B
PD-MAT
PD-MONDOPubDictionaries annotation with the MONDO dictionary.
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
PD-NCBIGene
PD-NCBITaxon
PD-NCBITaxon-B
PD-NGLY1-deficiency-BA batch annotator for NGLY1 deficiency
PD-Preeclampsia-B
PD-UBERON-AEIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.
Editors
Name Description
1-2 / 2
TextAETextAE version 5, which enables edition of attributes of denotations.
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.