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Jin-Dong Kim
User info
Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameTDescription# Ann. Updated atStatus
151-160 / 160 show all
LitCovid-sample-HP02023-11-29Testing
CORD-19_Commercial_use_subsetThe Commercial use subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.02023-11-29Released
Grays_part1_test02023-11-29Testing
LitCovid-docs-s02023-11-29Released
PubCasesCollectionabstracts in PubCases02023-11-29
CORD-19_Non-commercial_use_subsetThe Non commercial use subset of the CORD-19 dataset. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT.02023-11-29Released
CORD-19_bioRxiv_medRxiv_subsetThe bioRxiv/medRxiv subset of the CORD-19 dataset: pre-prints that are not peer reviewed. The documents in this project will be updated as the CORD-19 dataset grows. See the COVID DATASET LICENSE AGREEMENT. 02023-11-29Released
GlyCosmos-GlycanStructure-c02023-11-29Testing
PubMed-German-testA collection of PubMed abstracts which are written in German02023-11-24Developing
PubMed-2017abstracts published in 2017.02023-11-24Developing
Automatic annotators
Name Description
21-30 / 39 show all
PD-HP-PA-B
PD-MAT
PD-MONDOPubDictionaries annotation with the MONDO dictionary.
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
PD-NCBIGene
PD-NCBITaxon
PD-NCBITaxon-B
PD-NGLY1-deficiency-BA batch annotator for NGLY1 deficiency
PD-Preeclampsia-B
PD-UBERON-AEIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.
Editors
Name Description
1-2 / 2
TextAETextAE version 5, which enables edition of attributes of denotations.
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.