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Jin-Dong Kim
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Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameTDescription# Ann.Updated at Status
151-160 / 160 show all
epi-statement-test22023-11-30Testing
GO-CCAnnotation for cellular components as defined in the "Cellular Component" subtree of Gene Ontology17.6 K2023-11-30Developing
LitCovid-manual5402023-11-30Developing
test_lasige4942023-12-02Testing
GO-MFAnnotation for molecular functions as defined in the "Molecular Function" subtree of Gene Ontology19.7 K2023-12-04Testing
GlyCosmos6-UBERON689 K2023-12-15Developing
test_disfluency_annotation_auto_jp02023-12-28Testing
test-21061417.8 K2024-01-05Testing
GlyCosmos6-Glycan-Image1.95 K2024-05-17Developing
bionlp-st-ge-2016-corefCoreference annotation to the benchmark data set (reference and test) of BioNLP-ST 2016 GE task. For detailed information, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test).8532024-06-17Released
Automatic annotators
Name Description
21-30 / 39 show all
PD-HP-PA-B
PD-MAT
PD-MONDOPubDictionaries annotation with the MONDO dictionary.
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
PD-NCBIGene
PD-NCBITaxon
PD-NCBITaxon-B
PD-NGLY1-deficiency-BA batch annotator for NGLY1 deficiency
PD-Preeclampsia-B
PD-UBERON-AEIt annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85.
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.