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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
GlyCosmos15Collection of annotations to the abstracts from the following journals: Analytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports 2024-09-19
Projects
NameTDescription# Ann.Updated atStatus
91-100 / 161 show all
CHEMDNER-training-testThe training subset of the CHEMDNER corpus29.4 K2023-11-27Testing
pubtator-sampleSample annotation of PubTator produced by Zhiyong Lu et al.282023-11-27Testing
GlycoBiology-FMAFMA ontology-based annotation to GlycoBiology abstracts96.3 K2023-11-29Testing
metamap-sampleSample annotation of MetaMep, produced by Aronson, et al. An overview of MetaMap: historical perspective and recent advances, JAMIA 201010.9 K2023-11-27Testing
LitCovid-sample-Glycan3.21 K2023-11-29Testing
EDAM-topicsannotation for EDAM topics11.6 K2023-11-29Testing
EDAM-DFOannotation for EDAM terms for data, formats, and operations12.5 K2023-11-29Testing
LitCovid-sample-PD-HP2112023-11-29Testing
GlycoBiology-GOGO-based annotation to GlycoBiology abstracts02023-11-29Testing
DocumentLevelAnnotationSampleA sample project for document level annotation472023-11-29Testing
Automatic annotators
Name Description
11-20 / 40 show all
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
PD-GlycanStructures-B
PD-GlycoEpitope
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
PD-GlycoGenes20190927-B
PD-GlycoGenes-B
PD-GlycoProteins-B
PD-GO-BP-BBiological Processes as defined in GO
PD-HP
PD-HP-B
Editors
Name Description
1-1 / 1
TextAEThe official stable version of TextAE.