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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
GlyCosmos15Collection of annotations to the abstracts from the following journals: Analytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports 2024-09-19
Projects
NameTDescription # Ann.Updated atStatus
111-120 / 161 show all
performance-testa project for performance test480 K2023-11-27Testing
GlyCosmos600-docsA random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled.02023-11-29Released
LitCovid-GlycoBiologyArticles from GlycoBiology, received by the keyword "Covid-19"02023-11-29Testing
DocumentLevelAnnotationSampleA sample project for document level annotation472023-11-29Testing
LitCoin-PubTator-for-TuningA set of randomly selected PubMed articles with PubTator annotation. The labels of PubTator annotations are converted to corresponding labels for LitCoin as follows: 'Gene' -> 'GeneOrGeneProduct', 'Disease' -> 'DiseaseOrPhenotypicFeature', 'Chemical' -> 'ChemicalEntity' 'Species' -> 'OrganismTaxon' 'Mutation' -> 'SequenceVariant' 'CellLine' -> 'CellLine'14.2 K2023-11-29
GlyCosmos6-Glycan-Motif-StructureAutomatic annotation by Covid-19_Glycan-Motif.107 K2024-07-25Developing
Glycosmos6-GlycoEpitopeAutomatic annotation by PD-GlycoEpitope.19.9 K2023-11-28Developing
Glycosmos6-MATAutomatic annotation by PD-MAT.263 K2023-11-29Developing
BioASQ-samplecollection of PubMed articles which appear in the BioASQ sample data set.02023-11-28Testing
genia-medco-corefCoreference annotation made to the Genia corpus, following the MUC annotation scheme. It is a product of the collaboration between the Genia and the MedCo projects.45.9 K2023-11-24Developing
Automatic annotators
Name Description
11-20 / 40 show all
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
PD-GlycanStructures-B
PD-GlycoEpitope
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
PD-GlycoGenes20190927-B
PD-GlycoGenes-B
PD-GlycoProteins-B
PD-GO-BP-BBiological Processes as defined in GO
PD-HP
PD-HP-B
Editors
NameDescription
1-1 / 1
TextAEThe official stable version of TextAE.