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Jin-Dong Kim
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NameTDescription# Ann.Updated at Status
61-70 / 160 show all
GlyCosmos600-CLO1.73 K2023-11-28Testing
pubmed-2016abstracts published in 201602023-11-28
twitter-test132023-11-28Developing
LitCovid-sample-Pubtator3.86 K2023-11-28Uploading
uniprot-mouseProtein annotation based on UniProt11.5 K2023-11-28Developing
pubmed-sentences-benchmarkA benchmark data for text segmentation into sentences. The source of annotation is the GENIA treebank v1.0. Following is the process taken. began with the GENIA treebank v1.0. sentence annotations were extracted and converted to PubAnnotation JSON. uploaded. 12 abstracts met alignment failure. among the 12 failure cases, 4 had a dot('.') character where there should be colon (':'). They were manually fixed then successfully uploaded: 7903907, 8053950, 8508358, 9415639. among the 12 failed abstracts, 8 were "250 word truncation" cases. They were manually fixed and successfully uploaded. During the fixing, manual annotations were added for the missing pieces of text. 30 abstracts had extra text in the end, indicating copyright statement, e.g., "Copyright 1998 Academic Press." They were annotated as a sentence in GTB. However, the text did not exist anymore in PubMed. Therefore, the extra texts were removed, together with the sentence annotation to them. 18.4 K2023-11-28Released
LitCovid-PD-FMA-UBERON1.3 M2023-11-28Developing
testtesttest5.2 K2023-11-29Developing
bionlp-st-ge-2016-uniprotUniProt protein annotation to the benchmark data set of BioNLP-ST 2016 GE task: reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test). The annotations are produced based on a dictionary which is semi-automatically compiled for the 34 full paper articles included in the benchmark data set (20 in the reference data set + 14 in the test data set). For detailed information about BioNLP-ST GE 2016 task data sets, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test). 16.2 K2023-11-29Beta
LitCovid-sample-HP02023-11-29Testing
Automatic annotators
Name Description
11-20 / 39 show all
PD-GlycanStructures-B
PD-GlycoEpitope
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
PD-GlycoGenes20190927-B
PD-GlycoGenes-B
PD-GlycoProteins-B
PD-GO-BP-BBiological Processes as defined in GO
PD-HP
PD-HP-B
PD-HP-PA
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.