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Jin-Dong Kim
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Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameTDescription# Ann.Updated atStatus
131-140 / 160 show all
LitCovid-PD-HP922 K2023-11-28Beta
LitCovid-PAS-EnjuPredicate-argument structure annotation produced by the Enju parser.125 K2023-11-28Beta
LitCovid-sample-PD-IDO1.27 K2023-11-28Beta
LitCovid-sample-sentences2.3 K2023-11-29Beta
DisGeNETDisease-Gene association annotation.3.12 M2023-11-24Beta
LitCovid-sample-PD-GO-BP-07082023-11-29Beta
LitCovid-sample-PD-UBERONPubDictionaries annotation for UBERON terms - updated at 2020-04-30 It is annotation for anatomical entities based on Uberon. The terms in Uberon are uploaded in PubDictionaries (Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved. 3102023-11-28Beta
LitCovid-sample-PD-NCBITaxon1.35 K2023-11-29Beta
bionlp-st-ge-2016-uniprotUniProt protein annotation to the benchmark data set of BioNLP-ST 2016 GE task: reference data set (bionlp-st-ge-2016-reference) and test data set (bionlp-st-ge-2016-test). The annotations are produced based on a dictionary which is semi-automatically compiled for the 34 full paper articles included in the benchmark data set (20 in the reference data set + 14 in the test data set). For detailed information about BioNLP-ST GE 2016 task data sets, please refer to the benchmark reference data set (bionlp-st-ge-2016-reference) and benchmark test data set (bionlp-st-ge-2016-test). 16.2 K2023-11-29Beta
LitCovid-PubTator5.88 M2023-11-24Beta
Automatic annotators
Name Description
11-20 / 40 show all
PD-FMA-PAE-BBatch mode annotator of PD-FMA-PAE
PD-GlycanStructures-B
PD-GlycoEpitope
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
PD-GlycoGenes20190927-B
PD-GlycoGenes-B
PD-GlycoProteins-B
PD-GO-BP-BBiological Processes as defined in GO
PD-HP
PD-HP-B
Editors
Name Description
1-1 / 1
TextAEThe official stable version of TextAE.