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Jin-Dong Kim
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Collections
NameDescriptionUpdated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
GlyCosmos15Collection of annotations to the abstracts from the following journals: Analytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports 2024-09-19
Projects
NameT Description# Ann.Updated atStatus
61-70 / 163 show all
Grays_part1_test02023-11-29Testing
LitCovid-sample-PD-MONDO1.21 K2023-11-27Developing
Grays_part2_test8.57 K2023-11-29Testing
LitCovid-docs-s02023-11-29Released
MENA-example52023-11-29
EDAM-topicsannotation for EDAM topics11.6 K2023-11-29Testing
GlycoBiology-FMAFMA ontology-based annotation to GlycoBiology abstracts96.3 K2023-11-29Testing
PubCasesCollectionabstracts in PubCases02023-11-29
LitCoin-GeneOrGeneProduct-v2threshold = 0.938.98 K2023-11-29
GlyCosmos600-MAT8632023-11-29Testing
Automatic annotators
NameDescription
1-10 / 38 show all
PubTator-SpeciesTo pull the pre-computed Species annotation from PubTator.
PubTator-MutationTo pull the pre-computed mutation annotation from PubTator.
PubTator-GeneTo pull the pre-computed gene annotation from PubTator.
PubTator-DiseaseTo pull the pre-computed disease annotation from PubTator.
PubTator-ChemicalTo pull the pre-computed chemical annotation from PubTator.
TextSentencersentence segmentation
PubTatorPubTator annotation provided by NCBI
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
PD-MONDOPubDictionaries annotation with the MONDO dictionary.
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
Editors
NameDescription
1-1 / 1
TextAEThe official stable version of TextAE.