PubAnnotation

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Jin-Dong Kim

User info

Collections

Name		Description	Updated at

« 1 2 11-12 / 12 show all
Preeclampsia		Preeclampsia-related annotations for text mining	2019-03-10
GlycoBiology		Annotations made to the titles and abstracts of the journal 'GlycoBiology'	2019-03-10

Projects

Name	T	Description	# Ann.	Updated at	Status

« 1 2 ... 9 10 11 12 13 14 15 16 17 » 121-130 / 161 show all
GO-MF		Annotation for molecular functions as defined in the "Molecular Function" subtree of Gene Ontology	19.7 K	2023-12-04	Testing
Glycosmos6-GlycoEpitope		Automatic annotation by PD-GlycoEpitope.	19.9 K	2023-11-28	Developing
GlyCosmos15-Glycan			21.4 K	2024-09-19	Developing
uniprot-human		Uniprot proteins for human	21.8 K	2023-11-29	Testing
Glycosmos15-GlycoEpitope			27.8 K	2024-09-18	Developing
CHEMDNER-training-test		The training subset of the CHEMDNER corpus	29.4 K	2023-11-27	Testing
GO-BP		Annotation for biological processes as defined in the "Biological Process" subset of Gene Ontology	35.4 K	2023-11-29	Developing
genia-medco-coref		Coreference annotation made to the Genia corpus, following the MUC annotation scheme. It is a product of the collaboration between the Genia and the MedCo projects.	45.9 K	2023-11-24	Developing
NGLY1-deficiency		A collection of PubMed abstracts that may be related to NGLY1 deficiency.	60.5 K	2023-11-29	Developing
Preeclampsia-compare			67.2 K	2023-11-29	Testing

Automatic annotators

Name	Description

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PubTator-Species	To pull the pre-computed Species annotation from PubTator.
PubTator-Mutation	To pull the pre-computed mutation annotation from PubTator.
PubTator-Gene	To pull the pre-computed gene annotation from PubTator.
PubTator-Disease	To pull the pre-computed disease annotation from PubTator.
PubTator-Chemical	To pull the pre-computed chemical annotation from PubTator.
TextSentencer	sentence segmentation
PubTator	PubTator annotation provided by NCBI
PD-MONDO-B	PubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
PD-MONDO	PubDictionaries annotation with the MONDO dictionary.
PD-CHEBI	Pubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version

Editors

Name	Description

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TextAE	The official stable version of TextAE.