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Jin-Dong Kim
User info
Collections
NameDescriptionUpdated at
11-12 / 12 show all
LitCoin-Test2021-12-23
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
Projects
NameTDescription# Ann. Updated atStatus
51-60 / 158 show all
CORD-19-sample-MONDO1132023-11-29Developing
CORD-19-sample-sentences1612023-11-27Developing
LitCovid-sample-MedDRA1852023-11-27Testing
LitCovid-PubTator-s1962023-11-29
Test-SequenceVariant2002023-11-28
LitCovid-sample-PD-HP2112023-11-29Testing
test102122023-11-24
LitCovid-sample-PD-MAT2512023-11-29Developing
GlyCosmos600-GlycoEpitope2772023-11-27Testing
LitCovid-sample-PD-UBERONPubDictionaries annotation for UBERON terms - updated at 2020-04-30 It is annotation for anatomical entities based on Uberon. The terms in Uberon are uploaded in PubDictionaries (Uberon), with which the annotations in this project are produced. The parameter configuration used for this project is here. Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved. 3102023-11-28Beta
Automatic annotators
NameDescription
1-10 / 40 show all
PubTator-SpeciesTo pull the pre-computed Species annotation from PubTator.
PubTator-MutationTo pull the pre-computed mutation annotation from PubTator.
PubTator-GeneTo pull the pre-computed gene annotation from PubTator.
PubTator-DiseaseTo pull the pre-computed disease annotation from PubTator.
PubTator-ChemicalTo pull the pre-computed chemical annotation from PubTator.
TextSentencersentence segmentation
PubTatorPubTator annotation provided by NCBI
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
PD-MONDOPubDictionaries annotation with the MONDO dictionary.
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
Editors
Name Description
1-1 / 1
TextAEThe official stable version of TextAE.