| DisGeNet-2017-sample | | | 2.93 K | 2023-11-29 | Testing | |
| LitCoin-PubTator-for-Tuning | | A set of randomly selected PubMed articles with PubTator annotation.
The labels of PubTator annotations are converted to corresponding labels for LitCoin as follows:
'Gene' -> 'GeneOrGeneProduct',
'Disease' -> 'DiseaseOrPhenotypicFeature',
'Chemical' -> 'ChemicalEntity'
'Species' -> 'OrganismTaxon'
'Mutation' -> 'SequenceVariant'
'CellLine' -> 'CellLine' | 14.2 K | 2023-11-29 | | |
| GlyCosmos600-GlycanStructure | | | 97 | 2023-11-29 | Testing | |
| LitCovid-sample-PD-HP | | | 211 | 2023-11-29 | Testing | |
| pubtator-sample | | Sample annotation of PubTator produced by Zhiyong Lu et al. | 28 | 2023-11-27 | Testing | |
| LitCovid-PD-MONDO-v1 | | PubDictionaries annotation for disease terms - updated at 2020-04-20
It is based on MONDO Version 2020-04-20.
The terms in MONDO are loaded in PubDictionaries, with which the annotations in this project are produced. The parameter configuration used for this project is here.
Note that it is an automatically generated dictionary-based annotation. It will be updated periodically, as the documents are increased, and the dictionary is improved. | 13.4 K | 2023-11-29 | Released | |
| GlyCosmos600-docs | | A random collection of 600 PubMed abstracts from 6 glycobiology-related journals: Glycobiology, Glycoconjugate journal, The Journal of biological chemistry, Journal of proteome research, Journal of proteomics, and Carbohydrate research. The whole PMIDs were collected on June 11, 2019. From each journal, 100 PMIDs were randomly sampled. | 0 | 2023-11-29 | Released | |
| CORD-19-sample-HP | | | 39 | 2023-11-27 | Developing | |
| LitCovid-sample-HP | | | 0 | 2023-11-29 | Testing | |
| LitCovid-PubTator-s | | | 196 | 2023-11-29 | | |
