| PD-FMA-PAE | Physical Anatomical Entities from FMA | |
| PD-UBERON-AE | It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. Threshold is set to 0.85. | |
| PD-UBERON-AE-B | It annotates for anatomical entities, based on the UBERON-AE dictionary on PubDictionaries. It used the default threshold, 0.85. It uses the batch mode annotation, and may be used for annotation to a large amount of documents. | |
| PD-UBERON-AE-2023 | It annotates for anatomical entities, based on the UBERON-AE-2023 dictionary on PubDictionaries. Threshold is set to 0.85. | |
| EnjuParser | Enju HPSG Parser developed by University of Tokyo. | |
| PD-GO-BP-B | Biological Processes as defined in GO | |
| PD-FMA-PAE-B | Batch mode annotator of PD-FMA-PAE | |
| discourse-simplifier | A discourse analyzer developed by Univ. Manchester. | |
| PD-GlycoEpitope-B | A batch annotator using PubDictionaries with the dictionary 'GlycoEpitope' | |
| PD-NGLY1-deficiency-B | A batch annotator for NGLY1 deficiency | |
