> top > users > Jin-Dong Kim
Jin-Dong Kim
User info
Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameTDescription# Ann.Updated atStatus
91-100 / 160 show all
GlycosmosP-GlycoEpitope242023-11-29Testing
GlyCosmos600-GlycoProteinsGlycoProtein annotations were made using the glycoprotein-name dictionary on PubDictionaries: http://pubannotation.org/projects/GlyCosmos600-docs The documents were imported from the GlyCosmos600-docs project: http://pubannotation.org/projects/GlyCosmos600-docs3.68 K2023-11-27Testing
bionlp-st-ge-2016-reference-eval4262023-11-29Testing
LitCovid-sample-DRON02023-11-29Testing
LitCovid-sample-CHEBI1.44 K2023-11-29Testing
speech-test62023-11-26Testing
EDAM-topicsannotation for EDAM topics11.6 K2023-11-29Testing
CORD-19-SciBite-sentences11.2 K2023-11-26Testing
uniprot-humanUniprot proteins for human21.8 K2023-11-29Testing
LitCoin-entities-OrganismTaxon-PD9492023-11-27Testing
Automatic annotators
NameDescription
31-39 / 39 show all
PD-MONDOPubDictionaries annotation with the MONDO dictionary.
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
PubTatorPubTator annotation provided by NCBI
TextSentencersentence segmentation
PubTator-ChemicalTo pull the pre-computed chemical annotation from PubTator.
PubTator-DiseaseTo pull the pre-computed disease annotation from PubTator.
PubTator-GeneTo pull the pre-computed gene annotation from PubTator.
PubTator-MutationTo pull the pre-computed mutation annotation from PubTator.
PubTator-SpeciesTo pull the pre-computed Species annotation from PubTator.
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.