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Jin-Dong Kim
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Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameTDescription# Ann.Updated at Status
151-160 / 161 show all
GlyCosmos6-Glycan-Motif-StructureAutomatic annotation by Covid-19_Glycan-Motif.107 K2024-07-25Developing
GlyCosmos6-Glycan-Motif-Image87.8 K2024-07-30Developing
GlyCosmos600-FMA13.8 K2024-09-12
testtesttest17.4 K2024-09-16Developing
mondo_diseaseannotation for diseases and disorders as defined in MONDO. Automatic annotation by PD-MONDO.1.16 M2024-09-18Developing
Glycosmos15-GlycoEpitope27.8 K2024-09-18Developing
NCBITAXONannotation for NCBI taxonomy. Automatic annotation by PD-NCBITaxon.1.1 M2024-09-18Developing
GlyCosmos15-docsAnalytical_Chemistry Biochim_Biophys_Acta Carbohydrate_Research Cell Glycobiology Glycoconjugate_Journal J_Am_Chem_Soc Journal_of_Biological_Chemistry Journal_of_Proteome_Research Journal_of_Proteomics Molecular_and_Cellular_Proteomics Nature_Biotechnology Nature_Communications Nature_Methods Scientific_Reports02024-09-19Released
Anatomy-MATAnatomical structures based on Minimal Anatomical Terminology (MAT).778 K2024-09-19Developing
GlyCosmos15-Glycan21.4 K2024-09-19Developing
Automatic annotators
NameDescription
31-40 / 40 show all
PD-CHEBIPubdictionaries annotation using the terms sourced from CHEBI, the 2020-03-31 version
PD-MONDOPubDictionaries annotation with the MONDO dictionary.
PD-MONDO-BPubDictionaries annotation with the MONDO dictionary. Asynchronous protocol.
PubTatorPubTator annotation provided by NCBI
TextSentencersentence segmentation
PubTator-ChemicalTo pull the pre-computed chemical annotation from PubTator.
PubTator-DiseaseTo pull the pre-computed disease annotation from PubTator.
PubTator-GeneTo pull the pre-computed gene annotation from PubTator.
PubTator-MutationTo pull the pre-computed mutation annotation from PubTator.
PubTator-SpeciesTo pull the pre-computed Species annotation from PubTator.
Editors
Name Description
1-1 / 1
TextAEThe official stable version of TextAE.