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Jin-Dong Kim
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Collections
NameDescription Updated at
11-12 / 12 show all
Glycosmos6This collection contains annotation projects which target all the PubMed abstracts (at the time of January 14, 2022) from the 6 glycobiology-related journals: Glycobiology Glycoconjugate journal The Journal of biological chemistry Journal of proteome research Journal of proteomics Carbohydrate research 2023-11-16
LitCovid-sampleVarious annotations to a sample set of LitCovid, to demonstrate potential of harmonized various annotations.2021-01-14
Projects
NameT Description# Ann.Updated atStatus
1-10 / 159 show all
GlyCosmos600-CLO1.73 K2023-11-28Testing
LitCovid-manual5402023-11-30Developing
semrep-sampleSample annotation of SemRep, produced by Rindflesch, et al. Rindflesch, T.C. and Fiszman, M. (2003). The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text. Journal of Biomedical Informatics, 36(6):462-477.11.1 K2023-11-29Testing
GlyCosmos-GlycanStructure-c02023-11-29Testing
metamap-sampleSample annotation of MetaMep, produced by Aronson, et al. An overview of MetaMap: historical perspective and recent advances, JAMIA 201010.9 K2023-11-27Testing
example2122023-11-29Testing
CHEMDNER-training-testThe training subset of the CHEMDNER corpus29.4 K2023-11-27Testing
DocumentLevelAnnotationSampleA sample project for document level annotation472023-11-29Testing
tutorial152023-11-29Testing
glycogenes2.75 K2023-11-30Testing
Automatic annotators
NameDescription
11-20 / 38 show all
PD-HP-PA-B
PD-NCBITaxon
PD-GlycoEpitope
PD-CLO
PD-MAT
Glycan-Motif-Image
PD-GlycanStructures-B
PD-GlycoGenes-B
PD-NGLY1-deficiency-BA batch annotator for NGLY1 deficiency
PD-GlycoEpitope-BA batch annotator using PubDictionaries with the dictionary 'GlycoEpitope'
Editors
NameDescription
1-2 / 2
TextAE-oldTextAE version 4, which was the latest stable version until Apr. 19, 2020.
TextAETextAE version 5, which enables edition of attributes of denotations.