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NCBI-Disease-Corpus-GPT5-withguidelines

Id	Subject	Object	Predicate	Lexical cue
T1	103-131	DiseaseClass	denotes	congenital eye malformations
T2	175-183	SpecificDisease	denotes	aniridia
T3	185-215	SpecificDisease	denotes	congenital absence of the iris
T4	234-257	DiseaseClass	denotes	malformation of the eye
T5	293-301	Modifier	denotes	aniridia
T6	742-750	Modifier	denotes	aniridia
T7	978-986	SpecificDisease	denotes	aniridia
T8	1085-1101	SpecificDisease	denotes	ectopia pupillae
T9	1125-1145	SpecificDisease	denotes	congenital nystagmus
T10	1210-1218	Modifier	denotes	aniridia

NCBI-Disease-Corpus-GPT5-noguidelines

Id	Subject	Object	Predicate	Lexical cue
T1	103-113	Modifier	denotes	congenital
T2	175-183	SpecificDisease	denotes	aniridia
T3	185-195	Modifier	denotes	congenital
T4	220-224	Modifier	denotes	rare
T5	225-233	Modifier	denotes	dominant
T6	234-257	DiseaseClass	denotes	malformation of the eye
T7	293-301	SpecificDisease	denotes	aniridia
T8	742-750	SpecificDisease	denotes	aniridia
T9	969-977	Modifier	denotes	textbook
T10	978-986	SpecificDisease	denotes	aniridia
T11	1064-1072	Modifier	denotes	atypical
T12	1085-1101	SpecificDisease	denotes	ectopia pupillae
T13	1103-1119	SpecificDisease	denotes	displaced pupils
T14	1125-1135	Modifier	denotes	congenital
T15	1147-1161	SpecificDisease	denotes	searching gaze
T16	1197-1209	Modifier	denotes	recognizable
T17	1210-1218	SpecificDisease	denotes	aniridia
T18	1551-1572	DiseaseClass	denotes	PAX6 -related disease

NCBI-Disease-Corpus-GPT5-guidelineprompt

Id	Subject	Object	Predicate	Lexical cue
T1	103-131	DiseaseClass	denotes	congenital eye malformations
T2	175-183	SpecificDisease	denotes	aniridia
T3	185-215	SpecificDisease	denotes	congenital absence of the iris
T4	293-301	Modifier	denotes	aniridia
T5	742-750	Modifier	denotes	aniridia
T6	978-986	SpecificDisease	denotes	aniridia
T7	1085-1101	SpecificDisease	denotes	ectopia pupillae
T8	1125-1145	SpecificDisease	denotes	congenital nystagmus
T9	1210-1218	Modifier	denotes	aniridia

NCBI-Disease-Corpus-Moderated1

Id	Subject	Object	Predicate	Lexical cue
T1	103-131	DiseaseClass	denotes	congenital eye malformations
T2	175-183	SpecificDisease	denotes	aniridia
T3	185-215	SpecificDisease	denotes	congenital absence of the iris
T4	225-257	DiseaseClass	denotes	dominant malformation of the eye
T5	293-301	Modifier	denotes	aniridia
T6	742-750	Modifier	denotes	aniridia
T7	978-986	SpecificDisease	denotes	aniridia
T8	1085-1101	SpecificDisease	denotes	ectopia pupillae
T9	1125-1145	SpecificDisease	denotes	congenital nystagmus
T10	1210-1218	Modifier	denotes	aniridia
T11	1551-1572	DiseaseClass	denotes	PAX6 -related disease

DisGeNET

Id	Subject	Object	Predicate	Lexical cue
T0	850-854	gene:5080	denotes	PAX6
T1	978-986	disease:C0003076	denotes	aniridia
T2	896-900	gene:5080	denotes	PAX6
T3	978-986	disease:C0003076	denotes	aniridia
R1	T0	T1	associated_with	PAX6,aniridia
R2	T2	T3	associated_with	PAX6,aniridia

DisGeNET5_gene_disease

Id	Subject	Object	Predicate	Lexical cue
9931324-0#55#59#gene5080	55-59	gene5080	denotes	PAX6
9931324-0#114#131#diseaseC0015393	114-131	diseaseC0015393	denotes	eye malformations
9931324-5#27#31#gene5080	1015-1019	gene5080	denotes	PAX6
9931324-5#97#113#diseaseC1271219	1085-1101	diseaseC1271219	denotes	ectopia pupillae
9931324-5#137#157#diseaseC0700501	1125-1145	diseaseC0700501	denotes	congenital nystagmus
9931324-5#222#230#diseaseC0003076	1210-1218	diseaseC0003076	denotes	aniridia
55#59#gene5080114#131#diseaseC0015393	9931324-0#55#59#gene5080	9931324-0#114#131#diseaseC0015393	associated_with	PAX6,eye malformations
27#31#gene508097#113#diseaseC1271219	9931324-5#27#31#gene5080	9931324-5#97#113#diseaseC1271219	associated_with	PAX6,ectopia pupillae
27#31#gene5080137#157#diseaseC0700501	9931324-5#27#31#gene5080	9931324-5#137#157#diseaseC0700501	associated_with	PAX6,congenital nystagmus
27#31#gene5080222#230#diseaseC0003076	9931324-5#27#31#gene5080	9931324-5#222#230#diseaseC0003076	associated_with	PAX6,aniridia

PubCasesHPO

Id	Subject	Object	Predicate	Lexical cue
AB1	175-183	HP:0000526	denotes	aniridia
AB2	293-301	HP:0000526	denotes	aniridia
AB3	742-750	HP:0000526	denotes	aniridia
AB4	978-986	HP:0000526	denotes	aniridia
AB5	1085-1101	HP:0009918	denotes	ectopia pupillae
AB6	1125-1145	HP:0006934	denotes	congenital nystagmus
AB7	1210-1218	HP:0000526	denotes	aniridia

NCBIDiseaseCorpus

Id	Subject	Object	Predicate	Lexical cue
T1	103-131	DiseaseClass:D005124	denotes	congenital eye malformations
T2	175-183	SpecificDisease:D015783	denotes	aniridia
T3	185-215	SpecificDisease:D015783	denotes	congenital absence of the iris
T4	234-257	DiseaseClass:D005124	denotes	malformation of the eye
T5	293-301	Modifier:D015783	denotes	aniridia
T6	742-750	Modifier:D015783	denotes	aniridia
T7	978-986	SpecificDisease:D015783	denotes	aniridia
T8	1085-1101	SpecificDisease:C536185	denotes	ectopia pupillae
T9	1103-1119	SpecificDisease:C536185	denotes	displaced pupils
T10	1125-1145	SpecificDisease:D020417	denotes	congenital nystagmus
T11	1147-1161	SpecificDisease:D020417	denotes	searching gaze
T12	1210-1218	Modifier:D015783	denotes	aniridia
T13	1551-1572	DiseaseClass:OMIM:106210	denotes	PAX6 -related disease

NCBI-Disease-Test

Id	Subject	Object	Predicate	Lexical cue	database_id
T104	103-131	DiseaseClass	denotes	congenital eye malformations	D005124
T105	175-183	SpecificDisease	denotes	aniridia	D015783
T106	185-215	SpecificDisease	denotes	congenital absence of the iris	D015783
T107	234-257	DiseaseClass	denotes	malformation of the eye	D005124
T108	293-301	Modifier	denotes	aniridia	D015783
T109	742-750	Modifier	denotes	aniridia	D015783
T110	978-986	SpecificDisease	denotes	aniridia	D015783
T111	1085-1101	SpecificDisease	denotes	ectopia pupillae	C536185
T112	1103-1119	SpecificDisease	denotes	displaced pupils	C536185
T113	1125-1145	SpecificDisease	denotes	congenital nystagmus	D020417
T114	1147-1161	SpecificDisease	denotes	searching gaze	D020417
T115	1210-1218	Modifier	denotes	aniridia	D015783
T116	1551-1572	DiseaseClass	denotes	PAX6 -related disease	OMIM:106210

NCBI-Disease-Test-Assistant-Knowledge

Id	Subject	Object	Predicate	Lexical cue
T1	114-131	DiseaseClass	denotes	eye malformations
T2	175-183	SpecificDisease	denotes	aniridia
T3	293-301	SpecificDisease	denotes	aniridia
T4	742-750	SpecificDisease	denotes	aniridia
T5	978-986	SpecificDisease	denotes	aniridia
T6	1085-1101	SpecificDisease	denotes	ectopia pupillae
T7	1125-1145	SpecificDisease	denotes	congenital nystagmus
T8	1210-1218	SpecificDisease	denotes	aniridia
T9	1565-1572	DiseaseClass	denotes	disease

NCBI-Disease-Test-4o-NoGuidelineInPrompt

Id	Subject	Object	Predicate	Lexical cue
T1	103-131	DiseaseClass	denotes	congenital eye malformations
T2	175-183	SpecificDisease	denotes	aniridia
T3	293-301	SpecificDisease	denotes	aniridia
T4	742-750	SpecificDisease	denotes	aniridia
T5	978-986	SpecificDisease	denotes	aniridia
T6	1085-1101	SpecificDisease	denotes	ectopia pupillae
T7	1125-1145	SpecificDisease	denotes	congenital nystagmus
T8	1210-1218	SpecificDisease	denotes	aniridia
T9	1551-1572	CompositeMention	denotes	PAX6 -related disease

NCBI-Disease-Corpus-o3-2

Id	Subject	Object	Predicate	Lexical cue
T1	103-131	SpecificDisease	denotes	congenital eye malformations
T2	175-216	SpecificDisease	denotes	aniridia (congenital absence of the iris)
T3	293-301	SpecificDisease	denotes	aniridia
T4	742-750	SpecificDisease	denotes	aniridia
T5	978-986	SpecificDisease	denotes	aniridia
T6	1085-1120	SpecificDisease	denotes	ectopia pupillae (displaced pupils)
T7	1125-1162	SpecificDisease	denotes	congenital nystagmus (searching gaze)
T8	1210-1218	Modifier	denotes	aniridia
T9	1551-1572	SpecificDisease	denotes	PAX6 -related disease

NCBI-Disease-Corpus-high-o3-1

Id	Subject	Object	Predicate	Lexical cue
T1	103-131	DiseaseClass	denotes	congenital eye malformations
T2	175-183	SpecificDisease	denotes	aniridia
T3	185-215	SpecificDisease	denotes	congenital absence of the iris
T4	293-301	SpecificDisease	denotes	aniridia
T5	742-750	SpecificDisease	denotes	aniridia
T6	978-986	SpecificDisease	denotes	aniridia
T7	1085-1101	SpecificDisease	denotes	ectopia pupillae
T8	1103-1119	SpecificDisease	denotes	displaced pupils
T9	1125-1145	SpecificDisease	denotes	congenital nystagmus
T10	1147-1161	SpecificDisease	denotes	searching gaze
T11	1210-1218	SpecificDisease	denotes	aniridia
T12	1551-1572	DiseaseClass	denotes	PAX6 -related disease

NCBI-Disease-Corpus-high-o3-2

Id	Subject	Object	Predicate	Lexical cue
T1	103-131	DiseaseClass	denotes	congenital eye malformations
T2	175-183	SpecificDisease	denotes	aniridia
T3	185-215	SpecificDisease	denotes	congenital absence of the iris
T4	293-301	SpecificDisease	denotes	aniridia
T5	742-750	SpecificDisease	denotes	aniridia
T6	978-986	SpecificDisease	denotes	aniridia
T7	1085-1101	SpecificDisease	denotes	ectopia pupillae
T8	1103-1119	SpecificDisease	denotes	displaced pupils
T9	1125-1145	SpecificDisease	denotes	congenital nystagmus
T10	1147-1161	SpecificDisease	denotes	searching gaze
T11	1210-1218	SpecificDisease	denotes	aniridia

NCBI-Disease-Test-4o-GuidelineInPrompt

Id	Subject	Object	Predicate	Lexical cue
T1	175-183	SpecificDisease	denotes	aniridia
T2	293-301	SpecificDisease	denotes	aniridia
T3	742-750	SpecificDisease	denotes	aniridia
T4	978-986	SpecificDisease	denotes	aniridia
T5	1085-1101	SpecificDisease	denotes	ectopia pupillae
T6	1125-1145	SpecificDisease	denotes	congenital nystagmus
T7	1210-1218	SpecificDisease	denotes	aniridia

NCBI-Disease-Corpus-UpdatedGuideline

Id	Subject	Object	Predicate	Lexical cue
T1	175-183	SpecificDisease	denotes	aniridia
T2	293-301	SpecificDisease	denotes	aniridia
T3	742-750	SpecificDisease	denotes	aniridia
T4	978-986	SpecificDisease	denotes	aniridia
T5	1085-1101	SpecificDisease	denotes	ectopia pupillae
T6	1125-1145	SpecificDisease	denotes	congenital nystagmus
T7	1210-1218	SpecificDisease	denotes	aniridia

NCBI-Disease-Corpus-humanintheloop

Id	Subject	Object	Predicate	Lexical cue
T1	175-183	SpecificDisease	denotes	aniridia
T2	293-301	SpecificDisease	denotes	aniridia
T3	742-750	SpecificDisease	denotes	aniridia
T4	978-986	SpecificDisease	denotes	aniridia
T5	1085-1101	SpecificDisease	denotes	ectopia pupillae
T6	1125-1145	SpecificDisease	denotes	congenital nystagmus
T7	1210-1218	SpecificDisease	denotes	aniridia

NCBI-Disease-Corpus-rezarta1

Id	Subject	Object	Predicate	Lexical cue
T1	175-183	SpecificDisease	denotes	aniridia
T2	293-301	SpecificDisease	denotes	aniridia
T3	742-750	SpecificDisease	denotes	aniridia
T4	978-986	SpecificDisease	denotes	aniridia
T5	1085-1101	SpecificDisease	denotes	ectopia pupillae
T6	1125-1145	SpecificDisease	denotes	congenital nystagmus
T7	1210-1218	SpecificDisease	denotes	aniridia

NCBI-Disease-Corpus-All

Id	Subject	Object	Predicate	Lexical cue	database_id
T104	103-131	DiseaseClass	denotes	congenital eye malformations	D005124
T105	175-183	SpecificDisease	denotes	aniridia	D015783
T106	185-215	SpecificDisease	denotes	congenital absence of the iris	D015783
T107	234-257	DiseaseClass	denotes	malformation of the eye	D005124
T108	293-301	Modifier	denotes	aniridia	D015783
T109	742-750	Modifier	denotes	aniridia	D015783
T110	978-986	SpecificDisease	denotes	aniridia	D015783
T111	1085-1101	SpecificDisease	denotes	ectopia pupillae	C536185
T112	1103-1119	SpecificDisease	denotes	displaced pupils	C536185
T113	1125-1145	SpecificDisease	denotes	congenital nystagmus	D020417
T114	1147-1161	SpecificDisease	denotes	searching gaze	D020417
T115	1210-1218	Modifier	denotes	aniridia	D015783
T116	1551-1572	DiseaseClass	denotes	PAX6 -related disease	OMIM:106210

NCBI-Disease-Corpus-2stage-All

Id	Subject	Object	Predicate	Lexical cue
T1	175-183	SpecificDisease	denotes	aniridia
T2	293-301	SpecificDisease	denotes	aniridia
T3	742-750	SpecificDisease	denotes	aniridia
T4	978-986	SpecificDisease	denotes	aniridia
T5	1085-1101	SpecificDisease	denotes	ectopia pupillae
T6	1125-1145	SpecificDisease	denotes	congenital nystagmus
T7	1210-1218	SpecificDisease	denotes	aniridia

NCBI-Disease-Corpus-rezarta-All

Id	Subject	Object	Predicate	Lexical cue
T1	175-183	SpecificDisease	denotes	aniridia
T2	293-301	SpecificDisease	denotes	aniridia
T3	742-750	SpecificDisease	denotes	aniridia
T4	978-986	SpecificDisease	denotes	aniridia
T5	1085-1101	SpecificDisease	denotes	ectopia pupillae
T6	1125-1145	SpecificDisease	denotes	congenital nystagmus
T7	1210-1218	SpecificDisease	denotes	aniridia

NCBI-Disease-Corpus-4oGuideline-All

Id	Subject	Object	Predicate	Lexical cue
T1	97-131	Modifier	denotes	human congenital eye malformations
T2	150-165	Modifier	denotes	human PAX6 gene
T3	175-183	SpecificDisease	denotes	aniridia
T4	293-310	Modifier	denotes	aniridia patients
T5	742-759	Modifier	denotes	aniridia patients
T6	850-872	Modifier	denotes	PAX6 mutation analysis
T7	978-986	SpecificDisease	denotes	aniridia
T8	1085-1101	SpecificDisease	denotes	ectopia pupillae
T9	1125-1145	SpecificDisease	denotes	congenital nystagmus
T10	1210-1218	SpecificDisease	denotes	aniridia
T11	1551-1572	Modifier	denotes	PAX6 -related disease

NCBI-Disease-Corpus-Simple-All

Id	Subject	Object	Predicate	Lexical cue
T1	175-183	SpecificDisease	denotes	aniridia
T2	293-301	SpecificDisease	denotes	aniridia
T3	742-750	SpecificDisease	denotes	aniridia
T4	978-986	SpecificDisease	denotes	aniridia
T5	1085-1101	SpecificDisease	denotes	ectopia pupillae
T6	1125-1145	SpecificDisease	denotes	congenital nystagmus
T7	1210-1218	SpecificDisease	denotes	aniridia
T8	1565-1572	DiseaseClass	denotes	disease

123456

Id	Subject	Object	Predicate	Lexical cue
T1	175-183	SpecificDisease	denotes	aniridia
T2	293-301	SpecificDisease	denotes	aniridia
T3	742-750	SpecificDisease	denotes	aniridia
T4	978-986	SpecificDisease	denotes	aniridia
T5	1085-1101	SpecificDisease	denotes	ectopia pupillae
T6	1125-1145	SpecificDisease	denotes	congenital nystagmus
T7	1210-1218	SpecificDisease	denotes	aniridia

12345

Id	Subject	Object	Predicate	Lexical cue
T1	97-131	DiseaseClass	denotes	human congenital eye malformations
T2	175-183	SpecificDisease	denotes	aniridia
T3	293-301	SpecificDisease	denotes	aniridia
T4	742-750	SpecificDisease	denotes	aniridia
T5	978-986	SpecificDisease	denotes	aniridia
T6	1085-1101	SpecificDisease	denotes	ectopia pupillae
T7	1125-1145	SpecificDisease	denotes	congenital nystagmus
T8	1210-1218	SpecificDisease	denotes	aniridia
T9	1565-1572	DiseaseClass	denotes	disease