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PubMed:9886433 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 39-58 cell_type denotes naive human T cells
T2 97-112 cell_type denotes dendritic cells
T3 180-195 cell_type denotes Dendritic cells
T4 197-199 cell_type denotes DC
T5 212-215 cell_type denotes APC
T6 322-330 cell_type denotes human DC
T7 365-383 cell_type denotes naive CD4+ T cells
T8 387-395 protein denotes epitopes
T9 403-436 protein denotes immediate early 62 (IE62) protein
T10 487-491 protein denotes CD4+
T11 592-608 protein denotes VZV IE62 protein
T12 628-635 cell_type denotes T cells
T13 640-642 cell_type denotes DC
T14 730-743 cell_type denotes naive T cells
T15 969-971 cell_type denotes DC
T16 975-978 cell_type denotes APC
T17 980-989 cell_type denotes Monocytes
T18 1005-1008 cell_type denotes APC
T19 1163-1170 cell_type denotes T cells
T20 1285-1287 cell_type denotes DC
T21 1340-1349 cell_type denotes monocytes
T22 1353-1356 cell_type denotes APC
T23 1604-1606 cell_type denotes DC
T24 1610-1613 cell_type denotes APC

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-179 Sentence denotes Comparison of primary sensitization of naive human T cells to varicella-zoster virus peptides by dendritic cells in vitro with responses elicited in vivo by varicella vaccination.
S2 180-262 Sentence denotes Dendritic cells (DC) are potent APC during primary and secondary immune responses.
S3 263-469 Sentence denotes The first objective of this study was to determine whether human DC mediate in vitro sensitization of naive CD4+ T cells to epitopes of the immediate early 62 (IE62) protein of varicella zoster virus (VZV).
S4 470-671 Sentence denotes The induction of CD4+ T cell proliferative responses to eight synthetic peptides representing amino acid sequences of the VZV IE62 protein was assessed using T cells and DC from VZV-susceptible donors.
S5 672-833 Sentence denotes The second objective was to compare in vitro responses of naive T cells with responses to VZV peptides induced in vivo after immunization with varicella vaccine.
S6 834-979 Sentence denotes T cell proliferation was induced by three peptides, P1, P4, and P7, in 71-100% of the donors tested before and after vaccination using DC as APC.
S7 980-1050 Sentence denotes Monocytes were effective APC for VZV peptides only after immunization.
S8 1051-1214 Sentence denotes Two peptides, P2 and P8, induced naive T cell proliferation less effectively and were also less immunogenic for T cells from vaccinated or naturally immune donors.
S9 1215-1521 Sentence denotes T cell recognition of specific peptides was concordant between naive, DC-mediated responses, and postvaccine responses using monocytes as APC in 69% of comparisons (p = 0.05; chi2); the predictive value of a positive response to an IE62 peptide before immunization for T cell sensitization in vivo was 82%.
S10 1522-1707 Sentence denotes These observations indicate that primary T cell responses detected in vitro using DC as APC may be useful to characterize the potential immunogenicity of viral protein epitopes in vivo.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 39-58 NP denotes naive human T cells
C2 62-93 NP denotes varicella-zoster virus peptides
C3 97-112 NP denotes dendritic cells
C4 180-200 NP denotes Dendritic cells (DC)
C5 205-215 NP denotes potent APC
C6 322-330 NP denotes human DC
C7 399-468 NP denotes the immediate early 62 (IE62) protein of varicella zoster virus (VZV)
C8 588-608 NP denotes the VZV IE62 protein
C9 730-743 NP denotes naive T cells
C10 762-774 NP denotes VZV peptides
C11 797-832 NP denotes immunization with varicella vaccine
C12 870-884 NP denotes three peptides
C13 886-900 NP denotes P1, P4, and P7
C14 969-971 NP denotes DC
C15 975-978 NP denotes APC
C16 980-989 NP denotes Monocytes
C17 995-1008 NP denotes effective APC
C18 1013-1025 NP denotes VZV peptides
C19 1037-1049 NP denotes immunization
C20 1051-1063 NP denotes Two peptides
C21 1065-1074 NP denotes P2 and P8
C22 1340-1349 NP denotes monocytes
C23 1353-1356 NP denotes APC
C24 1604-1606 NP denotes DC
C25 1610-1613 NP denotes APC
R1 C4 C3 coref-ident Dendritic cells (DC),dendritic cells
R2 C6 C4 coref-ident human DC,Dendritic cells (DC)
R3 C8 C7 coref-ident the VZV IE62 protein,the immediate early 62 (IE62) protein of varicella zoster virus (VZV)
R4 C9 C1 coref-ident naive T cells,naive human T cells
R5 C10 C2 coref-ident VZV peptides,varicella-zoster virus peptides
R6 C13 C12 coref-appos "P1, P4, and P7",three peptides
R7 C14 C6 coref-ident DC,human DC
R8 C15 C5 coref-ident APC,potent APC
R9 C17 C15 coref-ident effective APC,APC
R10 C18 C10 coref-ident VZV peptides,VZV peptides
R11 C19 C11 coref-ident immunization,immunization with varicella vaccine
R12 C21 C20 coref-appos P2 and P8,Two peptides
R13 C22 C16 coref-ident monocytes,Monocytes
R14 C23 C17 coref-ident APC,effective APC
R15 C24 C14 coref-ident DC,DC
R16 C25 C23 coref-ident APC,APC

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 14-35 other_name denotes primary sensitization
T2 39-58 cell_type denotes naive human T cells
T3 62-84 virus denotes varicella-zoster virus
T4 97-112 cell_type denotes dendritic cells
T5 157-178 other_name denotes varicella vaccination
T6 180-195 cell_type denotes Dendritic cells
T7 197-199 cell_type denotes DC
T8 212-215 cell_type denotes APC
T9 322-327 cell_type denotes human
T10 328-330 cell_type denotes DC
T11 365-383 cell_type denotes naive CD4+ T cells
T12 387-395 protein_domain_or_region denotes epitopes
T13 403-436 protein_molecule denotes immediate early 62 (IE62) protein
T14 440-462 virus denotes varicella zoster virus
T15 464-467 virus denotes VZV
T16 487-491 protein_molecule denotes CD4+
T17 532-550 peptide denotes synthetic peptides
T18 592-595 virus denotes VZV
T19 628-635 cell_type denotes T cells
T20 640-642 cell_type denotes DC
T21 648-651 virus denotes VZV
T22 730-743 cell_type denotes naive T cells
T23 762-765 virus denotes VZV
T24 815-832 other_organic_compound denotes varicella vaccine
T25 834-854 other_name denotes T cell proliferation
T26 876-884 peptide denotes peptides
T27 886-888 peptide denotes P1
T28 890-892 peptide denotes P4
T29 898-900 peptide denotes P7
T30 969-971 cell_type denotes DC
T31 975-978 cell_type denotes APC
T32 980-989 cell_type denotes Monocytes
T33 1005-1008 cell_type denotes APC
T34 1013-1016 virus denotes VZV
T35 1017-1025 peptide denotes peptides
T36 1055-1063 peptide denotes peptides
T37 1065-1067 peptide denotes P2
T38 1072-1074 peptide denotes P8
T39 1090-1110 other_name denotes T cell proliferation
T40 1163-1170 cell_type denotes T cells
T41 1190-1213 other_name denotes naturally immune donors
T42 1246-1254 peptide denotes peptides
T43 1278-1284 other_name denotes naive,
T44 1285-1287 cell_type denotes DC
T45 1340-1349 cell_type denotes monocytes
T46 1353-1356 cell_type denotes APC
T47 1447-1459 peptide denotes IE62 peptide
T48 1484-1504 other_name denotes T cell sensitization
T49 1555-1579 other_name denotes primary T cell responses
T50 1604-1606 cell_type denotes DC
T51 1610-1613 cell_type denotes APC
T52 1648-1672 other_name denotes potential immunogenicity
T53 1676-1698 peptide denotes viral protein epitopes