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PubMed:9845362 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 36-43 cell_type denotes T cells
T2 51-86 protein denotes nuclear factor of activated T cells
T3 136-151 cell_type denotes primary T cells
T4 379-399 protein denotes transcription factor
T5 400-405 protein denotes NFATc
T6 503-523 cell_type denotes primary CD4+ T cells
T7 525-530 protein denotes NFATc
T8 642-657 protein denotes endogenous NFAT
T9 773-780 cell_type denotes T cells
T10 848-870 protein denotes regulated host factors
T11 883-888 protein denotes NFATc
T12 889-909 protein denotes transcription factor

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-87 Sentence denotes Host control of HIV-1 parasitism in T cells by the nuclear factor of activated T cells.
S2 88-238 Sentence denotes Post HIV-1 entry, productive HIV-1 infection of primary T cells requires overcoming several cellular blocks to provirus establishment and replication.
S3 239-361 Sentence denotes Activation of unknown host intracellular events overcomes such inhibitory steps and is concomitant with HIV-1 replication.
S4 362-524 Sentence denotes We show that the transcription factor NFATc was sufficient as a cellular factor to induce a highly permissive state for HIV-1 replication in primary CD4+ T cells.
S5 525-615 Sentence denotes NFATc overcame a blockade at reverse transcription and permitted active HIV-1 replication.
S6 616-772 Sentence denotes Pharmacologic blockade of endogenous NFAT activity by FK506 or CsA inhibited synthesis of reverse transcription and also potently blocked HIV-1 replication.
S7 773-910 Sentence denotes T cells therefore can become competent for HIV-1 replication by control of regulated host factors such as the NFATc transcription factor.
S8 911-1015 Sentence denotes The host mechanisms regulated by such permissivity factors are potential targets for anti-HIV-1 therapy.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 36-43 NP denotes T cells
C2 47-86 NP denotes the nuclear factor of activated T cells
C3 343-360 NP denotes HIV-1 replication
C4 375-405 NP denotes the transcription factor NFATc
C5 482-499 NP denotes HIV-1 replication
C6 525-530 NP denotes NFATc
C7 554-575 NP denotes reverse transcription
C8 706-727 NP denotes reverse transcription
C9 754-771 NP denotes HIV-1 replication
C10 773-780 NP denotes T cells
C11 816-833 NP denotes HIV-1 replication
C12 879-909 NP denotes the NFATc transcription factor
R1 C4 C2 coref-ident the transcription factor NFATc,the nuclear factor of activated T cells
R2 C5 C3 coref-ident HIV-1 replication,HIV-1 replication
R3 C6 C4 coref-ident NFATc,the transcription factor NFATc
R4 C8 C7 coref-ident reverse transcription,reverse transcription
R5 C9 C5 coref-ident HIV-1 replication,HIV-1 replication
R6 C10 C1 coref-ident T cells,T cells
R7 C11 C9 coref-ident HIV-1 replication,HIV-1 replication
R8 C12 C6 coref-ident the NFATc transcription factor,NFATc

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 16-21 virus denotes HIV-1
T2 36-43 cell_type denotes T cells
T3 51-86 protein_family_or_group denotes nuclear factor of activated T cells
T4 93-98 virus denotes HIV-1
T5 117-122 virus denotes HIV-1
T6 136-143 cell_type denotes primary
T7 144-151 cell_type denotes T cells
T8 199-221 other_name denotes provirus establishment
T9 226-238 other_name denotes replication.
T10 266-286 other_name denotes intracellular events
T11 343-348 virus denotes HIV-1
T12 379-399 protein_family_or_group denotes transcription factor
T13 400-405 protein_molecule denotes NFATc
T14 482-487 virus denotes HIV-1
T15 503-523 cell_type denotes primary CD4+ T cells
T16 525-530 protein_molecule denotes NFATc
T17 554-575 other_name denotes reverse transcription
T18 597-602 virus denotes HIV-1
T19 642-657 protein_family_or_group denotes endogenous NFAT
T20 670-675 other_organic_compound denotes FK506
T21 679-682 other_organic_compound denotes CsA
T22 706-727 other_name denotes reverse transcription
T23 754-759 virus denotes HIV-1
T24 773-780 cell_type denotes T cells
T25 816-821 virus denotes HIV-1
T26 848-870 protein_family_or_group denotes regulated host factors
T27 883-888 protein_molecule denotes NFATc
T28 889-909 protein_family_or_group denotes transcription factor
T29 949-969 other_name denotes permissivity factors
T30 996-1001 other_name denotes anti-
T31 1001-1006 virus denotes HIV-1

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 22-32 Disease denotes parasitism http://purl.obolibrary.org/obo/MONDO_0005135
T2 123-132 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 266-279 Body_part denotes intracellular http://purl.obolibrary.org/obo/GO_0005622

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 36-43 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T2 79-86 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T3 144-151 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T4 516-523 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084
T5 773-780 Cell denotes T cells http://purl.obolibrary.org/obo/CL:0000084