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pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 929-957 cand:TO:0000202-germination ratio denotes germination mutant phenotype
M_1 929-957 cand:TO:0000430-germination rate denotes germination mutant phenotype
M_2 929-957 cand:PPO:0002604-seedling absent denotes germination mutant phenotype
M_3 929-957 cand:PPO:0002007-seedling presence denotes germination mutant phenotype
M_4 929-957 cand:PO:0025289-seedling coleorhiza denotes germination mutant phenotype
M_5 929-957 cand:PO:0007057-seed germination stage denotes germination mutant phenotype
M_6 929-957 cand:PO:0020018-germination pore denotes germination mutant phenotype
M_7 929-957 cand:PECO:0001039-radiation mutagen exposure denotes germination mutant phenotype
M_8 929-957 cand:PECO:0007143-Erwinia plant exposure denotes germination mutant phenotype
M_9 7-17 cand:PO:0009002-plant cell denotes plant gene
M_10 7-17 cand:PECO:0007108-Proteobacterial plant exposure denotes plant gene
M_11 7-17 cand:PO:0025521-unicellular plant gametangium denotes plant gene
M_12 7-17 cand:PO:0000003-whole plant denotes plant gene
M_13 7-17 cand:TO:0000387-plant trait denotes plant gene
M_14 7-17 cand:TO:0006015-plant tissue development trait denotes plant gene
M_15 7-17 cand:PO:0025538-plant sap denotes plant gene
M_16 7-17 cand:PO:0009008-plant organ denotes plant gene
M_17 7-17 cand:PO:0025603-plant resin denotes plant gene
M_18 7-17 cand:PO:0025006-plant gamete denotes plant gene
M_19 911-914 GeneID:NA denotes rpe
M_20 0-3 GeneID:RAPID:Os03g0169100MSUID:LOC_Os03g07300 denotes RPE
T75009 380-401 xzyao:11440 denotes Meloidogyne incognita
T64278 545-556 WTO:0000011, funRiceGene:359 denotes development
T19811 1038-1049 WTO:0000011, funRiceGene:359 denotes development
T57899 769-794 xzyao:22325 denotes pentose phosphate pathway
T19657 361-379 WTO:0000514, xzyao:25583 denotes root-knot nematode
T38524 759-794 xzyao:41256 denotes oxidative pentose phosphate pathway
T36827 7-17 xzyao:43104 denotes plant gene
T2292 981-993 xzyao:27984 denotes dwarf plants
T67874 738-750 xzyao:24682 denotes Calvin cycle
T42252 163-167 PO:0009005, funRiceGene:362 denotes root
T51375 361-365 PO:0009005, funRiceGene:362 denotes root
T93494 587-591 PO:0009005, funRiceGene:362 denotes root
T110 1033-1037 PO:0009005, funRiceGene:362 denotes root
T37353 1318-1322 PO:0009005, funRiceGene:362 denotes root
T52991 997-1004 funRiceGene:256 denotes sucrose
T50127 666-675 funRiceGene:62 denotes phosphate
T4880 777-786 funRiceGene:62 denotes phosphate
T87233 1209-1217 funRiceGene:300 denotes meristem
T79873 759-768 funRiceGene:162 denotes oxidative
T75590 163-173 xzyao:15175 denotes root cells
T94289 1318-1328 xzyao:15175 denotes root cells
M_21 981-986 funRiceGene:135 denotes dwarf
M_22 948-957 WTO:0000005 denotes phenotype
M_23 1033-1049 funRiceGene:290, xzyao:16748 denotes root development
M_24 473-483 funRiceGene:145, xzyao:5527 denotes cell cycle
M_25 1161-1176 xzyao:20043 denotes genetic control
M_26 68-81 xzyao:5452 denotes feeding cells
M_27 1209-1227 xzyao:25972 denotes meristem formation
M_28 59-67 WTO:0000334 denotes nematode
M_29 193-201 WTO:0000334 denotes nematode
M_30 371-379 WTO:0000334 denotes nematode
M_31 522-530 WTO:0000334 denotes nematode
M_32 1115-1128 xzyao:8317 denotes lateral roots
M_33 653-687 hunflair:NA:Gene denotes D-ribulose-5-phosphate 3-epimerase
M_34 695-705 hunflair:NA:Gene denotes EC 5.1.3.1
M_35 653-675 hunflair:NA:Chemical denotes D-ribulose-5-phosphate
M_36 0-3 hunflair:NA:Gene denotes RPE
M_37 689-692 hunflair:NA:Gene denotes RPE
M_38 850-853 hunflair:NA:Gene denotes RPE
M_39 997-1004 hunflair:NA:Chemical denotes sucrose
M_40 265-276 hunflair:NA:Species denotes Arabidopsis
M_41 883-894 hunflair:NA:Species denotes Arabidopsis
M_42 332-335 hunflair:NA:Disease denotes NFS
M_43 541-544 hunflair:NA:Disease denotes NFS
M_44 895-898 hunflair:NA:Disease denotes NFS
M_45 380-401 hunflair:NA:Species denotes Meloidogyne incognita
M_46 265-285 hunflair:NA:Species denotes Arabidopsis thaliana
M_47 869-875 hunflair:NA:Species denotes potato
M_48 911-914 hunflair:NA:Gene denotes rpe
M_49 769-786 hunflair:NA:Chemical denotes pentose phosphate
M_50 265-285 pubtator:3702:Species denotes Arabidopsis thaliana
M_51 997-1004 pubtator:MESH:D013395:Chemical denotes sucrose
M_52 0-3 pubtator:836262:Gene denotes RPE
M_53 689-692 pubtator:836262:Gene denotes RPE
M_54 850-853 pubtator:836262:Gene denotes RPE
M_55 265-276 pubtator:3702:Species denotes Arabidopsis
M_56 883-894 pubtator:3702:Species denotes Arabidopsis
M_57 0-3 pubtator:102594969:Gene denotes RPE
M_58 689-692 pubtator:102594969:Gene denotes RPE
M_59 850-853 pubtator:102594969:Gene denotes RPE
M_60 769-786 pubtator:MESH:D010429:Chemical denotes pentose phosphate
M_61 869-875 pubtator:4113:Species denotes potato
M_62 361-379 pubtator:6303:Species denotes root-knot nematode
M_63 380-401 pubtator:6306:Species denotes Meloidogyne incognita
M_64 653-687 pubtator:836262:Gene denotes D-ribulose-5-phosphate 3-epimerase
M_65 911-914 pubtator:836262:Gene denotes rpe

21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 941-957 xzyao:17385 denotes mutant phenotype
M_1 759-768 funRiceGene:162 denotes oxidative
M_2 948-957 WTO:0000005 denotes phenotype
M_3 193-201 WTO:0000334 denotes nematode
M_4 371-379 WTO:0000334 denotes nematode
M_5 981-986 funRiceGene:135 denotes dwarf
M_6 361-379 WTO:0000514, xzyao:12807 denotes root-knot nematode
M_7 777-786 funRiceGene:62 denotes phosphate
M_8 1209-1217 funRiceGene:300 denotes meristem
M_9 163-167 PO:0009005, funRiceGene:362 denotes root
M_10 1033-1037 PO:0009005, funRiceGene:362 denotes root
M_11 1318-1322 PO:0009005, funRiceGene:362 denotes root
M_12 265-285 hunflair:NA:Species denotes Arabidopsis thaliana
M_13 869-875 hunflair:NA:Species denotes potato
M_14 911-914 hunflair:NA:Gene denotes rpe
M_15 695-705 hunflair:NA:Gene denotes EC 5.1.3.1
M_16 265-276 hunflair:NA:Species denotes Arabidopsis
M_17 883-894 hunflair:NA:Species denotes Arabidopsis
M_18 997-1004 hunflair:NA:Chemical denotes sucrose
M_19 653-687 hunflair:NA:Gene denotes D-ribulose-5-phosphate 3-epimerase
M_20 332-335 hunflair:NA:Disease denotes NFS
M_21 541-544 hunflair:NA:Disease denotes NFS
M_22 895-898 hunflair:NA:Disease denotes NFS
M_23 0-3 hunflair:NA:Gene denotes RPE
M_24 689-692 hunflair:NA:Gene denotes RPE
M_25 850-853 hunflair:NA:Gene denotes RPE
M_26 769-786 hunflair:NA:Chemical denotes pentose phosphate
M_27 380-401 hunflair:NA:Species denotes Meloidogyne incognita
M_28 653-675 hunflair:NA:Chemical denotes D-ribulose-5-phosphate
M_29 997-1004 pubtator:MESH:D013395:Chemical denotes sucrose
M_30 361-379 pubtator:6303:Species denotes root-knot nematode
M_31 265-276 pubtator:3702:Species denotes Arabidopsis
M_32 883-894 pubtator:3702:Species denotes Arabidopsis
M_33 265-285 pubtator:3702:Species denotes Arabidopsis thaliana
M_34 769-786 pubtator:MESH:D010429:Chemical denotes pentose phosphate
M_35 380-401 pubtator:6306:Species denotes Meloidogyne incognita
M_36 653-687 pubtator:836262:Gene denotes D-ribulose-5-phosphate 3-epimerase
M_37 0-3 pubtator:102594969:Gene denotes RPE
M_38 689-692 pubtator:102594969:Gene denotes RPE
M_39 850-853 pubtator:102594969:Gene denotes RPE
M_40 869-875 pubtator:4113:Species denotes potato
M_41 911-914 pubtator:836262:Gene denotes rpe
M_42 0-3 pubtator:836262:Gene denotes RPE
M_43 689-692 pubtator:836262:Gene denotes RPE
M_44 850-853 pubtator:836262:Gene denotes RPE

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 0-3 http://identifiers.org/oryzabase.gene/13805 denotes RPE
T2 653-687 http://identifiers.org/oryzabase.gene/13805 denotes D-ribulose-5-phosphate 3-epimerase
T3 689-692 http://identifiers.org/oryzabase.gene/13805 denotes RPE
T4 816-818 http://identifiers.org/oryzabase.gene/319 denotes RT
T5 850-853 http://identifiers.org/oryzabase.gene/13805 denotes RPE
T6 911-914 http://identifiers.org/oryzabase.gene/13805 denotes rpe
T7 981-986 http://identifiers.org/oryzabase.gene/846 denotes dwarf
T8 981-986 http://identifiers.org/oryzabase.gene/3037 denotes dwarf
T17881 0-3 http://identifiers.org/ricegap/LOC_Os03g07300 denotes RPE
T43590 653-687 http://identifiers.org/ricegap/LOC_Os03g07300 denotes D-ribulose-5-phosphate 3-epimerase
T30294 689-692 http://identifiers.org/ricegap/LOC_Os03g07300 denotes RPE
T70768 850-853 http://identifiers.org/ricegap/LOC_Os03g07300 denotes RPE
T40891 911-914 http://identifiers.org/ricegap/LOC_Os03g07300 denotes rpe
T22469 981-986 http://identifiers.org/ricegap/LOC_Os03g40540 denotes dwarf
T31414 0-3 http://identifiers.org/rapdb.locus/Os03g0169100 denotes RPE
T3061 653-687 http://identifiers.org/rapdb.locus/Os03g0169100 denotes D-ribulose-5-phosphate 3-epimerase
T46744 689-692 http://identifiers.org/rapdb.locus/Os03g0169100 denotes RPE
T61567 850-853 http://identifiers.org/rapdb.locus/Os03g0169100 denotes RPE
T87879 911-914 http://identifiers.org/rapdb.locus/Os03g0169100 denotes rpe
T74519 981-986 http://identifiers.org/rapdb.locus/Os03g0602300 denotes dwarf
T38207 0-3 http://identifiers.org/uniprot/B8APA6 denotes RPE
T84606 653-687 http://identifiers.org/uniprot/B8APA6 denotes D-ribulose-5-phosphate 3-epimerase
T26094 689-692 http://identifiers.org/uniprot/B8APA6 denotes RPE
T56920 850-853 http://identifiers.org/uniprot/B8APA6 denotes RPE
M_0 769-786 hunflair:NA:Chemical denotes pentose phosphate
M_1 332-335 hunflair:NA:Disease denotes NFS
M_2 541-544 hunflair:NA:Disease denotes NFS
M_3 895-898 hunflair:NA:Disease denotes NFS
M_4 695-705 hunflair:NA:Gene denotes EC 5.1.3.1
M_5 997-1004 hunflair:NA:Chemical denotes sucrose
M_6 911-914 hunflair:NA:Gene denotes rpe
M_7 380-401 hunflair:NA:Species denotes Meloidogyne incognita
M_8 653-675 hunflair:NA:Chemical denotes D-ribulose-5-phosphate
M_9 653-687 hunflair:NA:Gene denotes D-ribulose-5-phosphate 3-epimerase
M_10 0-3 hunflair:NA:Gene denotes RPE
M_11 689-692 hunflair:NA:Gene denotes RPE
M_12 850-853 hunflair:NA:Gene denotes RPE
M_13 265-285 hunflair:NA:Species denotes Arabidopsis thaliana
M_14 869-875 hunflair:NA:Species denotes potato
M_15 265-276 hunflair:NA:Species denotes Arabidopsis
M_16 883-894 hunflair:NA:Species denotes Arabidopsis

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 653-687 http://identifiers.org/oryzabase.gene/13805 denotes D-ribulose-5-phosphate 3-epimerase
T2 981-986 http://identifiers.org/oryzabase.gene/846 denotes dwarf

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 0-3 http://identifiers.org/oryzabase.gene/13805 denotes RPE
T2 689-692 http://identifiers.org/oryzabase.gene/13805 denotes RPE
T3 816-818 http://identifiers.org/oryzabase.gene/319 denotes RT
T4 850-853 http://identifiers.org/oryzabase.gene/13805 denotes RPE
T68901 0-3 http://identifiers.org/rapdb.locus/Os03g0169100 denotes RPE
T95615 689-692 http://identifiers.org/rapdb.locus/Os03g0169100 denotes RPE
T90572 850-853 http://identifiers.org/rapdb.locus/Os03g0169100 denotes RPE

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 769-786 hunflair:NA:Chemical denotes pentose phosphate
M_1 332-335 hunflair:NA:Disease denotes NFS
M_2 541-544 hunflair:NA:Disease denotes NFS
M_3 895-898 hunflair:NA:Disease denotes NFS
M_4 695-705 hunflair:NA:Gene denotes EC 5.1.3.1
M_5 997-1004 hunflair:NA:Chemical denotes sucrose
M_6 911-914 hunflair:NA:Gene denotes rpe
M_7 380-401 hunflair:NA:Species denotes Meloidogyne incognita
M_8 653-675 hunflair:NA:Chemical denotes D-ribulose-5-phosphate
M_9 653-687 hunflair:NA:Gene denotes D-ribulose-5-phosphate 3-epimerase
M_10 0-3 hunflair:NA:Gene denotes RPE
M_11 689-692 hunflair:NA:Gene denotes RPE
M_12 850-853 hunflair:NA:Gene denotes RPE
M_13 265-285 hunflair:NA:Species denotes Arabidopsis thaliana
M_14 869-875 hunflair:NA:Species denotes potato
M_15 265-276 hunflair:NA:Species denotes Arabidopsis
M_16 883-894 hunflair:NA:Species denotes Arabidopsis

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-82 Sentence denotes RPE, a plant gene involved in early developmental steps of nematode feeding cells.
T2 83-223 Sentence denotes Sedentary plant-parasitic nematodes are able to induce the redifferentiation of root cells into multinucleate nematode feeding sites (NFSs).
T3 224-402 Sentence denotes We have isolated by promoter trapping an Arabidopsis thaliana gene that is essential for the early steps of NFS formation induced by the root-knot nematode Meloidogyne incognita.
T4 403-531 Sentence denotes Its pattern of expression is similar to that of key regulators of the cell cycle, but it is not observed with the cyst nematode.
T5 532-616 Sentence denotes Later in NFS development, this gene is induced by both root-knot and cyst nematodes.
T6 617-802 Sentence denotes It encodes a protein similar to the D-ribulose-5-phosphate 3-epimerase (RPE) (EC 5.1.3.1), a key enzyme in the reductive Calvin cycle and the oxidative pentose phosphate pathway (OPPP).
T7 803-899 Sentence denotes Quantitative RT-PCR showed the accumulation of RPE transcripts in potato, as in Arabidopsis NFS.
T8 900-1025 Sentence denotes Homozygous rpe plants have a germination mutant phenotype that can be rescued in dwarf plants on sucrose-supplemented medium.
T9 1026-1129 Sentence denotes During root development, this gene is expressed in the meristems and initiation sites of lateral roots.
T10 1130-1386 Sentence denotes These results suggest that the genetic control of NFSs and the first stages of meristem formation share common steps and confirms the previous cytological observations which indicate that root cells undergo metabolic reprogramming when they turn into NFSs.