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PubMed:9835626 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 49-56 cell_type denotes B cells
T2 80-100 protein denotes metalloproteinases-1
T3 328-362 cell_line denotes Burkitt's lymphoma (BL) cell lines
T4 400-447 protein denotes tissue inhibitor of metalloproteinases (TIMP)-1
T5 471-495 cell_line denotes TIMP-1-positive BL lines
T6 570-576 protein denotes TIMP-1
T7 586-592 protein denotes TIMP-2
T8 790-814 cell_line denotes TIMP-1-negative BL lines
T9 816-822 protein denotes TIMP-1
T10 856-873 protein denotes metalloproteinase
T11 921-927 protein denotes TIMP-1
T12 983-989 protein denotes TIMP-1
T13 1180-1202 protein denotes anti-TIMP-1 antibodies
T14 1232-1238 protein denotes TIMP-1
T15 1285-1291 protein denotes TIMP-1
T16 1327-1333 protein denotes Bcl-XL
T17 1342-1347 protein denotes Bcl-2
T18 1369-1378 protein denotes NF-kappaB
T19 1446-1452 protein denotes TIMP-1
T20 1477-1484 cell_type denotes B cells
T21 1519-1525 protein denotes TIMP-1

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-101 Sentence denotes In vitro suppression of programmed cell death of B cells by tissue inhibitor of metalloproteinases-1.
S2 102-300 Sentence denotes Cellular pathways for induction of programmed cell death (PCD) have been identified, but little is known about specific extracellular matrix processes that may affect apoptosis along those pathways.
S3 301-448 Sentence denotes In this study, a series of Burkitt's lymphoma (BL) cell lines were assayed for their expression of tissue inhibitor of metalloproteinases (TIMP)-1.
S4 449-544 Sentence denotes Results indicate that TIMP-1-positive BL lines show resistance to cold-shock-induced apoptosis.
S5 545-815 Sentence denotes Furthermore, recombinant TIMP-1, but not TIMP-2 or a synthetic metalloproteinase inhibitor (BB-94), confers resistance to apoptosis induced by both CD95-dependent and -independent (cold shock, serum deprivation, and gamma-radiation) pathways in TIMP-1-negative BL lines.
S6 816-958 Sentence denotes TIMP-1 suppression of PCD is not due to metalloproteinase inhibition, as reduction and alkylation of the TIMP-1 did not abolish this activity.
S7 959-1135 Sentence denotes Retroviral induction of TIMP-1 not only resulted in cell survival but also in continued DNA synthesis for up to 5 d in the absence of serum, while controls underwent apoptosis.
S8 1136-1271 Sentence denotes This resistance to apoptosis is reversed by anti-TIMP-1 antibodies, demonstrating that secreted TIMP-1 is active in blocking apoptosis.
S9 1272-1414 Sentence denotes Furthermore, TIMP-1 upregulation induced expression of Bcl-XL but not Bcl-2 as well as decreased NF-kappaB activity as compared with controls.
S10 1415-1548 Sentence denotes These results demonstrate that TIMP-1 suppresses apoptosis in B cells and suggests a novel activity for TIMP-1 in tissue homeostasis.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 49-56 NP denotes B cells
C3 80-100 NP denotes metalloproteinases-1
C2 60-100 NP denotes tissue inhibitor of metalloproteinases-1
C5 137-164 NP denotes programmed cell death (PCD)
C4 102-164 NP denotes Cellular pathways for induction of programmed cell death (PCD)
C6 213-252 NP denotes specific extracellular matrix processes
C7 253-257 NP denotes that
C8 269-278 NP denotes apoptosis
C9 285-299 NP denotes those pathways
C10 316-362 NP denotes a series of Burkitt's lymphoma (BL) cell lines
C11 380-385 NP denotes their
C13 420-447 NP denotes metalloproteinases (TIMP)-1
C12 400-447 NP denotes tissue inhibitor of metalloproteinases (TIMP)-1
C14 838-841 NP denotes PCD
C15 856-884 NP denotes metalloproteinase inhibition
C16 917-927 NP denotes the TIMP-1
C17 944-957 NP denotes this activity
C18 983-989 NP denotes TIMP-1
C19 1106-1114 NP denotes controls
C20 1125-1134 NP denotes apoptosis
C21 1155-1164 NP denotes apoptosis
C22 1261-1270 NP denotes apoptosis
C23 1405-1413 NP denotes controls
C24 1446-1452 NP denotes TIMP-1
C25 1477-1484 NP denotes B cells
C26 1519-1525 NP denotes TIMP-1
R1 C7 C6 coref-relat that,specific extracellular matrix processes
R2 C9 C4 coref-ident those pathways,Cellular pathways for induction of programmed cell death (PCD)
R3 C11 C10 coref-pron their,a series of Burkitt's lymphoma (BL) cell lines
R4 C13 C3 coref-ident metalloproteinases (TIMP)-1,metalloproteinases-1
R5 C12 C2 coref-ident tissue inhibitor of metalloproteinases (TIMP)-1,tissue inhibitor of metalloproteinases-1
R6 C14 C5 coref-ident PCD,programmed cell death (PCD)
R7 C16 C13 coref-ident the TIMP-1,metalloproteinases (TIMP)-1
R8 C17 C15 coref-ident this activity,metalloproteinase inhibition
R9 C18 C16 coref-ident TIMP-1,the TIMP-1
R10 C20 C8 coref-ident apoptosis,apoptosis
R11 C21 C20 coref-ident apoptosis,apoptosis
R12 C22 C21 coref-ident apoptosis,apoptosis
R13 C23 C19 coref-ident controls,controls
R14 C24 C18 coref-ident TIMP-1,TIMP-1
R15 C25 C1 coref-ident B cells,B cells
R16 C26 C24 coref-ident TIMP-1,TIMP-1

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-20 other_name denotes In vitro suppression
T2 49-56 cell_type denotes B cells
T3 60-76 other_name denotes tissue inhibitor
T4 80-100 protein_molecule denotes metalloproteinases-1
T5 102-119 other_name denotes Cellular pathways
T6 137-158 other_name denotes programmed cell death
T7 160-163 other_name denotes PCD
T8 269-278 other_name denotes apoptosis
T9 328-362 cell_line denotes Burkitt's lymphoma (BL) cell lines
T10 400-447 protein_molecule denotes tissue inhibitor of metalloproteinases (TIMP)-1
T11 471-477 protein_molecule denotes TIMP-1
T12 515-543 other_name denotes cold-shock-induced apoptosis
T13 570-576 protein_molecule denotes TIMP-1
T14 586-592 protein_molecule denotes TIMP-2
T15 608-635 other_organic_compound denotes metalloproteinase inhibitor
T16 637-642 other_organic_compound denotes BB-94
T17 667-676 other_name denotes apoptosis
T18 726-736 other_name denotes cold shock
T19 738-755 other_name denotes serum deprivation
T20 761-776 other_name denotes gamma-radiation
T21 790-796 protein_molecule denotes TIMP-1
T22 816-822 protein_molecule denotes TIMP-1
T23 838-841 other_name denotes PCD
T24 856-873 protein_molecule denotes metalloproteinase
T25 921-927 protein_molecule denotes TIMP-1
T26 983-989 protein_molecule denotes TIMP-1
T27 1047-1060 other_name denotes DNA synthesis
T28 1093-1098 tissue denotes serum
T29 1125-1134 other_name denotes apoptosis
T30 1155-1164 other_name denotes apoptosis
T31 1180-1185 protein_family_or_group denotes anti-
T32 1185-1191 protein_molecule denotes TIMP-1
T33 1232-1238 protein_molecule denotes TIMP-1
T34 1261-1270 other_name denotes apoptosis
T35 1285-1291 protein_molecule denotes TIMP-1
T36 1327-1333 protein_molecule denotes Bcl-XL
T37 1342-1347 protein_molecule denotes Bcl-2
T38 1369-1378 protein_complex denotes NF-kappaB
T39 1446-1452 protein_molecule denotes TIMP-1
T40 1464-1473 other_name denotes apoptosis
T41 1477-1484 cell_type denotes B cells
T42 1500-1514 other_name denotes novel activity
T43 1519-1525 protein_molecule denotes TIMP-1
T44 1529-1547 other_name denotes tissue homeostasis