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sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-154 Sentence denotes Seminoma in a postmenopausal woman with a Y;15 translocation in peripheral blood lymphocytes and a t(Y;15)/45,X Turner mosaic pattern in skin fibroblasts.
TextSentencer_T2 155-258 Sentence denotes We report an unusual case of a 55 year old Japanese woman with a seminoma but relatively normal menses.
TextSentencer_T3 259-495 Sentence denotes The patient was a phenotypic female with late onset menarche (18 years of age), who was amenorrhoeic for the first year, followed by menses of one to three days' slight flow with dysmenorrhoea, but an otherwise normal menstrual history.
TextSentencer_T4 496-641 Sentence denotes A typical seminoma was removed from the left adnexal region and an immature testis was identified separately as an associated right adnexal mass.
TextSentencer_T5 642-747 Sentence denotes Repeated karyotypic studies on peripheral blood lymphocyte cultures showed only 46,X,-Y,t(Y;15)(q12;p13).
TextSentencer_T6 748-877 Sentence denotes Cytogenetic examination of the patient's younger brother, who had fathered three healthy children, showed an identical karyotype.
TextSentencer_T7 878-1064 Sentence denotes Mosaicism of 46,X,-Y,t(Y;15)(q12;p13)/45,X cell lines was found in skin samples from the patient's elbow and genital regions, although there were no clinical stigmata of Turner syndrome.
TextSentencer_T8 1065-1150 Sentence denotes An androgen receptor binding assay of cultured genital skin fibroblasts was negative.
TextSentencer_T9 1151-1437 Sentence denotes Molecular analysis using Southern blot hybridisation, PCR, and direct DNA sequencing showed that neither the patient nor her brother had a detectable deletion or other abnormalities of Y chromosome sequences, including the SRY (sex determining region of the Y chromosome) gene sequence.
TextSentencer_T10 1438-1660 Sentence denotes These findings suggest that Turner mosaicism of the 45,X cell line may have contributed to this atypical presentation in an XY female, although we cannot exclude abnormalities of other genes related to sex differentiation.
T1 0-154 Sentence denotes Seminoma in a postmenopausal woman with a Y;15 translocation in peripheral blood lymphocytes and a t(Y;15)/45,X Turner mosaic pattern in skin fibroblasts.
T2 155-258 Sentence denotes We report an unusual case of a 55 year old Japanese woman with a seminoma but relatively normal menses.
T3 259-495 Sentence denotes The patient was a phenotypic female with late onset menarche (18 years of age), who was amenorrhoeic for the first year, followed by menses of one to three days' slight flow with dysmenorrhoea, but an otherwise normal menstrual history.
T4 496-641 Sentence denotes A typical seminoma was removed from the left adnexal region and an immature testis was identified separately as an associated right adnexal mass.
T5 642-747 Sentence denotes Repeated karyotypic studies on peripheral blood lymphocyte cultures showed only 46,X,-Y,t(Y;15)(q12;p13).
T6 748-877 Sentence denotes Cytogenetic examination of the patient's younger brother, who had fathered three healthy children, showed an identical karyotype.
T7 878-1064 Sentence denotes Mosaicism of 46,X,-Y,t(Y;15)(q12;p13)/45,X cell lines was found in skin samples from the patient's elbow and genital regions, although there were no clinical stigmata of Turner syndrome.
T8 1065-1150 Sentence denotes An androgen receptor binding assay of cultured genital skin fibroblasts was negative.
T9 1151-1437 Sentence denotes Molecular analysis using Southern blot hybridisation, PCR, and direct DNA sequencing showed that neither the patient nor her brother had a detectable deletion or other abnormalities of Y chromosome sequences, including the SRY (sex determining region of the Y chromosome) gene sequence.
T10 1438-1660 Sentence denotes These findings suggest that Turner mosaicism of the 45,X cell line may have contributed to this atypical presentation in an XY female, although we cannot exclude abnormalities of other genes related to sex differentiation.

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 42-60 DNA denotes Y;15 translocation
T2 64-92 cell_type denotes peripheral blood lymphocytes
T3 137-153 cell_type denotes skin fibroblasts
T4 673-709 cell_type denotes peripheral blood lymphocyte cultures
T5 891-931 cell_line denotes 46,X,-Y,t(Y;15)(q12;p13)/45,X cell lines
T6 1103-1136 cell_line denotes cultured genital skin fibroblasts
T7 1374-1436 DNA denotes SRY (sex determining region of the Y chromosome) gene sequence
T8 1490-1504 cell_line denotes 45,X cell line

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-154 Sentence denotes Seminoma in a postmenopausal woman with a Y;15 translocation in peripheral blood lymphocytes and a t(Y;15)/45,X Turner mosaic pattern in skin fibroblasts.
S2 155-258 Sentence denotes We report an unusual case of a 55 year old Japanese woman with a seminoma but relatively normal menses.
S3 259-495 Sentence denotes The patient was a phenotypic female with late onset menarche (18 years of age), who was amenorrhoeic for the first year, followed by menses of one to three days' slight flow with dysmenorrhoea, but an otherwise normal menstrual history.
S4 496-641 Sentence denotes A typical seminoma was removed from the left adnexal region and an immature testis was identified separately as an associated right adnexal mass.
S5 642-747 Sentence denotes Repeated karyotypic studies on peripheral blood lymphocyte cultures showed only 46,X,-Y,t(Y;15)(q12;p13).
S6 748-877 Sentence denotes Cytogenetic examination of the patient's younger brother, who had fathered three healthy children, showed an identical karyotype.
S7 878-1064 Sentence denotes Mosaicism of 46,X,-Y,t(Y;15)(q12;p13)/45,X cell lines was found in skin samples from the patient's elbow and genital regions, although there were no clinical stigmata of Turner syndrome.
S8 1065-1150 Sentence denotes An androgen receptor binding assay of cultured genital skin fibroblasts was negative.
S9 1151-1437 Sentence denotes Molecular analysis using Southern blot hybridisation, PCR, and direct DNA sequencing showed that neither the patient nor her brother had a detectable deletion or other abnormalities of Y chromosome sequences, including the SRY (sex determining region of the Y chromosome) gene sequence.
S10 1438-1660 Sentence denotes These findings suggest that Turner mosaicism of the 45,X cell line may have contributed to this atypical presentation in an XY female, although we cannot exclude abnormalities of other genes related to sex differentiation.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 184-257 NP denotes a 55 year old Japanese woman with a seminoma but relatively normal menses
C2 259-270 NP denotes The patient
C3 275-337 NP denotes a phenotypic female with late onset menarche (18 years of age)
C4 339-342 NP denotes who
C5 722-746 NP denotes 46,X,-Y,t(Y;15)(q12;p13)
C6 775-804 NP denotes the patient's younger brother
C7 806-809 NP denotes who
C8 854-876 NP denotes an identical karyotype
C9 1256-1267 NP denotes the patient
C11 1272-1275 NP denotes her
C10 1272-1283 NP denotes her brother
C12 1559-1571 NP denotes an XY female
R1 C2 C1 coref-ident The patient,a 55 year old Japanese woman with a seminoma but relatively normal menses
R2 C4 C3 coref-relat who,a phenotypic female with late onset menarche (18 years of age)
R3 C7 C6 coref-relat who,the patient's younger brother
R4 C8 C5 coref-ident an identical karyotype,"46,X,-Y,t(Y;15)(q12;p13)"
R5 C9 C2 coref-ident the patient,The patient
R6 C11 C9 coref-pron her,the patient
R7 C10 C6 coref-ident her brother,the patient's younger brother
R8 C12 C9 coref-ident an XY female,the patient

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-8 other_name denotes Seminoma
T2 14-34 multi_cell denotes postmenopausal woman
T3 42-60 DNA_domain_or_region denotes Y;15 translocation
T4 64-92 cell_type denotes peripheral blood lymphocytes
T5 99-133 other_name denotes t(Y;15)/45,X Turner mosaic pattern
T6 137-153 cell_type denotes skin fibroblasts
T7 198-212 multi_cell denotes Japanese woman
T8 220-228 other_name denotes seminoma
T9 251-257 tissue denotes menses
T10 277-294 multi_cell denotes phenotypic female
T11 311-319 other_name denotes menarche
T12 347-359 other_name denotes amenorrhoeic
T13 392-398 tissue denotes menses
T14 438-451 other_name denotes dysmenorrhoea
T15 470-495 other_name denotes normal menstrual history.
T16 506-514 other_name denotes seminoma
T17 536-555 body_part denotes left adnexal region
T18 563-578 body_part denotes immature testis
T19 622-640 tissue denotes right adnexal mass
T20 651-669 other_name denotes karyotypic studies
T21 673-709 cell_type denotes peripheral blood lymphocyte cultures
T22 722-746 other_name denotes 46,X,-Y,t(Y;15)(q12;p13)
T23 748-771 other_name denotes Cytogenetic examination
T24 829-845 multi_cell denotes healthy children
T25 867-876 other_name denotes karyotype
T26 891-931 cell_line denotes 46,X,-Y,t(Y;15)(q12;p13)/45,X cell lines
T27 945-957 tissue denotes skin samples
T28 1048-1063 other_name denotes Turner syndrome
T29 1103-1119 cell_line denotes cultured genital
T30 1120-1136 cell_type denotes skin fibroblasts
T31 1176-1203 other_name denotes Southern blot hybridisation
T32 1205-1208 other_name denotes PCR
T33 1221-1235 other_name denotes DNA sequencing
T34 1336-1358 polynucleotide denotes Y chromosome sequences
T35 1374-1436 DNA_domain_or_region denotes SRY (sex determining region of the Y chromosome) gene sequence
T36 1490-1504 cell_line denotes 45,X cell line
T37 1534-1555 other_name denotes atypical presentation
T38 1562-1571 multi_cell denotes XY female
T39 1640-1659 other_name denotes sex differentiation

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 75-80 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T2 684-689 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T3 572-578 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testis
PD-UBERON-AE-B_T4 977-982 http://purl.obolibrary.org/obo/UBERON_0001461 denotes elbow

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 75-80 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T2 684-689 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T3 572-578 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testis
PD-UBERON-AE-B_T4 977-982 http://purl.obolibrary.org/obo/UBERON_0001461 denotes elbow

PubCasesORDO

Id Subject Object Predicate Lexical cue
AB1 1048-1063 ORDO:881 denotes Turner syndrome