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NCBI-Disease-Corpus-GPT5-withguidelines

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 217-254 DiseaseClass denotes disorder of fatty acid beta oxidation
T5 364-380 SpecificDisease denotes VLCAD deficiency
T6 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T7 460-472 SpecificDisease denotes hepatomegaly
T8 474-488 DiseaseClass denotes encephalopathy
T9 494-503 SpecificDisease denotes hypotonia
T10 535-551 SpecificDisease denotes VLCAD deficiency
T11 922-945 SpecificDisease denotes ventricular hypertrophy
T12 1061-1077 SpecificDisease denotes VLCAD deficiency
T13 1149-1163 DiseaseClass denotes cardiomyopathy

NCBI-Disease-Corpus-GPT5-noguidelines

Id Subject Object Predicate Lexical cue
T1 12-18 Modifier denotes severe
T2 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T3 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T4 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T5 217-254 DiseaseClass denotes disorder of fatty acid beta oxidation
T6 364-380 SpecificDisease denotes VLCAD deficiency
T7 424-430 Modifier denotes severe
T8 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T9 460-472 SpecificDisease denotes hepatomegaly
T10 474-488 SpecificDisease denotes encephalopathy
T11 494-503 SpecificDisease denotes hypotonia
T12 535-551 SpecificDisease denotes VLCAD deficiency
T13 922-945 SpecificDisease denotes ventricular hypertrophy
T14 1061-1077 SpecificDisease denotes VLCAD deficiency
T15 1149-1163 DiseaseClass denotes cardiomyopathy

NCBI-Disease-Corpus-GPT5-guidelineprompt

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 217-254 DiseaseClass denotes disorder of fatty acid beta oxidation
T5 364-380 SpecificDisease denotes VLCAD deficiency
T6 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T7 460-472 SpecificDisease denotes hepatomegaly
T8 474-488 DiseaseClass denotes encephalopathy
T9 494-503 SpecificDisease denotes hypotonia
T10 535-551 SpecificDisease denotes VLCAD deficiency
T11 922-945 SpecificDisease denotes ventricular hypertrophy
T12 1061-1077 SpecificDisease denotes VLCAD deficiency
T13 1149-1163 DiseaseClass denotes cardiomyopathy

NCBI-Disease-Corpus-Moderated1

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 217-254 DiseaseClass denotes disorder of fatty acid beta oxidation
T5 364-380 SpecificDisease denotes VLCAD deficiency
T6 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T7 474-488 DiseaseClass denotes encephalopathy
T8 535-551 SpecificDisease denotes VLCAD deficiency
T9 1061-1077 SpecificDisease denotes VLCAD deficiency
T10 1149-1163 DiseaseClass denotes cardiomyopathy

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-146 Sentence denotes Reversal of severe hypertrophic cardiomyopathy and excellent neuropsychologic outcome in very-long-chain acyl-coenzyme A dehydrogenase deficiency.
TextSentencer_T2 147-313 Sentence denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency is a disorder of fatty acid beta oxidation that reportedly has high rates of morbidity and mortality.
TextSentencer_T3 314-504 Sentence denotes We describe the outcome of a 5-year-old girl with VLCAD deficiency who was first seen at 5 months of age with severe hypertrophic cardiomyopathy, hepatomegaly, encephalopathy, and hypotonia.
TextSentencer_T4 505-591 Sentence denotes Biochemical studies indicated VLCAD deficiency caused by a stable yet inactive enzyme.
TextSentencer_T5 592-723 Sentence denotes Molecular genetic analysis of her VLCAD gene revealed a T1372C (F458L) missense mutation and a 1668 ACAG 1669 splice site mutation.
TextSentencer_T6 724-917 Sentence denotes After initial treatment with intravenous glucose and carnitine, the patient has thrived on a low-fat diet supplemented with medium-chain triglyceride oil and carnitine and avoidance of fasting.
TextSentencer_T7 918-1036 Sentence denotes Her ventricular hypertrophy resolved significantly over 1 year, and cognitively, she is in the superior range for age.
TextSentencer_T8 1037-1176 Sentence denotes Clinical recognition of VLCAD deficiency is important because it is one of the few directly treatable causes of cardiomyopathy in children.
T1 0-146 Sentence denotes Reversal of severe hypertrophic cardiomyopathy and excellent neuropsychologic outcome in very-long-chain acyl-coenzyme A dehydrogenase deficiency.
T2 147-313 Sentence denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency is a disorder of fatty acid beta oxidation that reportedly has high rates of morbidity and mortality.
T3 314-504 Sentence denotes We describe the outcome of a 5-year-old girl with VLCAD deficiency who was first seen at 5 months of age with severe hypertrophic cardiomyopathy, hepatomegaly, encephalopathy, and hypotonia.
T4 505-591 Sentence denotes Biochemical studies indicated VLCAD deficiency caused by a stable yet inactive enzyme.
T5 592-723 Sentence denotes Molecular genetic analysis of her VLCAD gene revealed a T1372C (F458L) missense mutation and a 1668 ACAG 1669 splice site mutation.
T6 724-917 Sentence denotes After initial treatment with intravenous glucose and carnitine, the patient has thrived on a low-fat diet supplemented with medium-chain triglyceride oil and carnitine and avoidance of fasting.
T7 918-1036 Sentence denotes Her ventricular hypertrophy resolved significantly over 1 year, and cognitively, she is in the superior range for age.
T8 1037-1176 Sentence denotes Clinical recognition of VLCAD deficiency is important because it is one of the few directly treatable causes of cardiomyopathy in children.

PubCasesHPO

Id Subject Object Predicate Lexical cue
TI1 19-46 HP:0001639 denotes hypertrophic cardiomyopathy
AB1 431-458 HP:0001639 denotes hypertrophic cardiomyopathy
AB2 460-472 HP:0002240 denotes hepatomegaly
AB3 474-488 HP:0001298 denotes encephalopathy
AB4 922-945 HP:0001714 denotes ventricular hypertrophy
AB5 1149-1163 HP:0001638 denotes cardiomyopathy

PubCasesORDO

Id Subject Object Predicate Lexical cue
AB1 194-211 ORDO:26793 denotes VLCAD) deficiency
AB2 364-380 ORDO:26793 denotes VLCAD deficiency
AB3 535-551 ORDO:26793 denotes VLCAD deficiency
AB4 1061-1077 ORDO:26793 denotes VLCAD deficiency

NCBIDiseaseCorpus

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease:D002312 denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease:C536353 denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease:C536353 denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease:C536353 denotes VLCAD deficiency
T5 431-458 SpecificDisease:D002312 denotes hypertrophic cardiomyopathy
T6 460-472 SpecificDisease:D006529 denotes hepatomegaly
T7 474-488 DiseaseClass:D001927 denotes encephalopathy
T8 494-503 SpecificDisease:D009123 denotes hypotonia
T9 535-551 SpecificDisease:C536353 denotes VLCAD deficiency
T10 1061-1077 SpecificDisease:C536353 denotes VLCAD deficiency
T11 1149-1163 DiseaseClass:D009202 denotes cardiomyopathy

NCBI-Disease-Test

Id Subject Object Predicate Lexical cue database_id
T430 19-46 SpecificDisease denotes hypertrophic cardiomyopathy D002312
T431 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency C536353
T432 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency C536353
T433 364-380 SpecificDisease denotes VLCAD deficiency C536353
T434 431-458 SpecificDisease denotes hypertrophic cardiomyopathy D002312
T435 460-472 SpecificDisease denotes hepatomegaly D006529
T436 474-488 DiseaseClass denotes encephalopathy D001927
T437 494-503 SpecificDisease denotes hypotonia D009123
T438 535-551 SpecificDisease denotes VLCAD deficiency C536353
T439 1061-1077 SpecificDisease denotes VLCAD deficiency C536353
T440 1149-1163 DiseaseClass denotes cardiomyopathy D009202

NCBI-Disease-Test-Assistant-Knowledge

Id Subject Object Predicate Lexical cue
T1 19-46 DiseaseClass denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 431-458 DiseaseClass denotes hypertrophic cardiomyopathy
T6 460-472 DiseaseClass denotes hepatomegaly
T7 474-488 DiseaseClass denotes encephalopathy
T8 494-503 DiseaseClass denotes hypotonia
T9 535-551 SpecificDisease denotes VLCAD deficiency
T10 922-945 DiseaseClass denotes ventricular hypertrophy
T11 1061-1077 SpecificDisease denotes VLCAD deficiency
T12 1149-1163 DiseaseClass denotes cardiomyopathy

NCBI-Disease-Test-4o-NoGuidelineInPrompt

Id Subject Object Predicate Lexical cue
T1 12-18 Modifier denotes severe
T2 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T3 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T4 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T5 229-254 DiseaseClass denotes fatty acid beta oxidation
T6 364-380 SpecificDisease denotes VLCAD deficiency
T7 424-430 Modifier denotes severe
T8 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T9 460-472 SpecificDisease denotes hepatomegaly
T10 474-488 SpecificDisease denotes encephalopathy
T11 494-503 SpecificDisease denotes hypotonia
T12 535-551 SpecificDisease denotes VLCAD deficiency
T13 922-945 SpecificDisease denotes ventricular hypertrophy
T14 1061-1077 SpecificDisease denotes VLCAD deficiency
T15 1149-1163 SpecificDisease denotes cardiomyopathy

NCBI-Disease-Corpus-o3-2

Id Subject Object Predicate Lexical cue
T1 12-46 SpecificDisease denotes severe hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 424-458 SpecificDisease denotes severe hypertrophic cardiomyopathy
T6 535-551 SpecificDisease denotes VLCAD deficiency
T7 1061-1077 SpecificDisease denotes VLCAD deficiency
T8 1149-1163 SpecificDisease denotes cardiomyopathy

NCBI-Disease-Corpus-high-o3-1

Id Subject Object Predicate Lexical cue
T1 12-46 SpecificDisease denotes severe hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 424-458 SpecificDisease denotes severe hypertrophic cardiomyopathy
T6 535-551 SpecificDisease denotes VLCAD deficiency
T7 1061-1077 SpecificDisease denotes VLCAD deficiency
T8 1149-1163 DiseaseClass denotes cardiomyopathy

NCBI-Disease-Corpus-high-o3-2

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-192 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase
T4 194-199 SpecificDisease denotes VLCAD
T5 201-211 SpecificDisease denotes deficiency
T6 364-380 SpecificDisease denotes VLCAD deficiency
T7 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T8 535-551 SpecificDisease denotes VLCAD deficiency
T9 1061-1077 SpecificDisease denotes VLCAD deficiency
T10 1149-1163 DiseaseClass denotes cardiomyopathy

NCBI-Disease-Test-4o-GuidelineInPrompt

Id Subject Object Predicate Lexical cue
T1 12-46 SpecificDisease denotes severe hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 424-458 SpecificDisease denotes severe hypertrophic cardiomyopathy
T6 460-472 SpecificDisease denotes hepatomegaly
T7 474-488 SpecificDisease denotes encephalopathy
T8 494-503 SpecificDisease denotes hypotonia
T9 535-551 SpecificDisease denotes VLCAD deficiency
T10 922-945 SpecificDisease denotes ventricular hypertrophy
T11 1061-1077 SpecificDisease denotes VLCAD deficiency
T12 1149-1163 SpecificDisease denotes cardiomyopathy

NCBI-Disease-Corpus-UpdatedGuideline

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T6 460-472 SpecificDisease denotes hepatomegaly
T7 474-488 SpecificDisease denotes encephalopathy
T8 494-503 SpecificDisease denotes hypotonia
T9 535-551 SpecificDisease denotes VLCAD deficiency
T10 1061-1077 SpecificDisease denotes VLCAD deficiency
T11 1149-1163 SpecificDisease denotes cardiomyopathy

NCBI-Disease-Corpus-humanintheloop

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T6 535-551 SpecificDisease denotes VLCAD deficiency
T7 1061-1077 SpecificDisease denotes VLCAD deficiency
T8 1149-1163 DiseaseClass denotes cardiomyopathy

NCBI-Disease-Corpus-rezarta1

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 DiseaseClass denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T6 460-472 SpecificDisease denotes hepatomegaly
T7 474-488 SpecificDisease denotes encephalopathy
T8 494-503 SpecificDisease denotes hypotonia
T9 535-551 SpecificDisease denotes VLCAD deficiency
T10 1061-1077 SpecificDisease denotes VLCAD deficiency
T11 1149-1163 SpecificDisease denotes cardiomyopathy

NCBI-Disease-Corpus-All

Id Subject Object Predicate Lexical cue database_id
T430 19-46 SpecificDisease denotes hypertrophic cardiomyopathy D002312
T431 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency C536353
T432 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency C536353
T433 364-380 SpecificDisease denotes VLCAD deficiency C536353
T434 431-458 SpecificDisease denotes hypertrophic cardiomyopathy D002312
T435 460-472 SpecificDisease denotes hepatomegaly D006529
T436 474-488 DiseaseClass denotes encephalopathy D001927
T437 494-503 SpecificDisease denotes hypotonia D009123
T438 535-551 SpecificDisease denotes VLCAD deficiency C536353
T439 1061-1077 SpecificDisease denotes VLCAD deficiency C536353
T440 1149-1163 DiseaseClass denotes cardiomyopathy D009202

NCBI-Disease-Corpus-2stage-All

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T6 460-472 SpecificDisease denotes hepatomegaly
T7 474-488 SpecificDisease denotes encephalopathy
T8 494-503 SpecificDisease denotes hypotonia
T9 535-551 SpecificDisease denotes VLCAD deficiency
T10 1061-1077 SpecificDisease denotes VLCAD deficiency
T11 1149-1163 DiseaseClass denotes cardiomyopathy

NCBI-Disease-Corpus-rezarta-All

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 DiseaseClass denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T6 460-472 SpecificDisease denotes hepatomegaly
T7 474-488 SpecificDisease denotes encephalopathy
T8 494-503 SpecificDisease denotes hypotonia
T9 535-551 SpecificDisease denotes VLCAD deficiency
T10 1061-1077 SpecificDisease denotes VLCAD deficiency
T11 1149-1163 DiseaseClass denotes cardiomyopathy

NCBI-Disease-Corpus-4oGuideline-All

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T6 460-472 SpecificDisease denotes hepatomegaly
T7 474-488 SpecificDisease denotes encephalopathy
T8 494-503 SpecificDisease denotes hypotonia
T9 535-551 SpecificDisease denotes VLCAD deficiency
T10 777-786 SpecificDisease denotes carnitine
T11 1061-1077 SpecificDisease denotes VLCAD deficiency
T12 1149-1163 SpecificDisease denotes cardiomyopathy

NCBI-Disease-Corpus-Simple-All

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 229-254 DiseaseClass denotes fatty acid beta oxidation
T5 364-380 SpecificDisease denotes VLCAD deficiency
T6 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T7 460-472 Modifier denotes hepatomegaly
T8 474-488 Modifier denotes encephalopathy
T9 494-503 Modifier denotes hypotonia
T10 535-551 SpecificDisease denotes VLCAD deficiency
T11 922-945 Modifier denotes ventricular hypertrophy
T12 1061-1077 SpecificDisease denotes VLCAD deficiency
T13 1149-1163 DiseaseClass denotes cardiomyopathy

123456

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 SpecificDisease denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T6 535-551 SpecificDisease denotes VLCAD deficiency
T7 1061-1077 SpecificDisease denotes VLCAD deficiency
T8 1149-1163 DiseaseClass denotes cardiomyopathy

12345

Id Subject Object Predicate Lexical cue
T1 19-46 SpecificDisease denotes hypertrophic cardiomyopathy
T2 89-145 SpecificDisease denotes very-long-chain acyl-coenzyme A dehydrogenase deficiency
T3 147-211 DiseaseClass denotes Very-long-chain acyl-coenzyme A dehydrogenase (VLCAD) deficiency
T4 364-380 SpecificDisease denotes VLCAD deficiency
T5 431-458 SpecificDisease denotes hypertrophic cardiomyopathy
T6 535-551 SpecificDisease denotes VLCAD deficiency
T7 1061-1077 SpecificDisease denotes VLCAD deficiency
T8 1149-1163 DiseaseClass denotes cardiomyopathy