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PubMed:9548490 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 26-48 protein denotes DNA-binding activities
T2 59-63 protein denotes CD19
T3 81-102 cell_type denotes human B lineage cells
T4 108-145 protein denotes B cell-specific cell surface molecule
T5 146-150 protein denotes CD19
T6 286-315 protein denotes cytoplasmic effector proteins
T7 331-335 protein denotes CD19
T8 345-366 cell_type denotes human B lineage cells
T9 394-440 protein denotes CD19/Vav/phosphatidylinositol-3 kinase complex
T10 470-474 protein denotes CD19
T11 479-482 protein denotes Vav
T12 506-509 protein denotes Ras
T13 559-563 protein denotes CD19
T14 629-634 protein denotes Elk-1
T15 650-669 protein denotes activator protein-1
T16 671-675 protein denotes AP-1
T17 718-727 protein denotes NF-kappaB
T18 729-750 protein denotes transcription factors
T19 770-774 protein denotes CD19
T20 814-836 cell_line denotes BLIN-1 pre-B cell line
T21 862-889 protein denotes cell surface mu heavy chain
T22 906-927 protein denotes surrogate light chain
T23 972-993 protein denotes cell surface mu/kappa
T24 1008-1012 protein denotes CD19
T25 1026-1035 cell_line denotes 1E8 cells
T26 1073-1093 protein denotes Elk-1 fusion protein
T27 1134-1154 protein denotes Elk-1 fusion protein
T28 1183-1213 cell_line denotes CD19 cross-linked BLIN-1 cells
T29 1265-1269 protein denotes AP-1
T30 1274-1283 protein denotes NF-kappaB
T31 1340-1344 protein denotes AP-1
T32 1393-1402 protein denotes NF-kappaB
T33 1455-1459 protein denotes CD19
T34 1477-1486 cell_line denotes 1E8 cells
T35 1525-1529 protein denotes JunD
T36 1534-1548 protein denotes c-Fos proteins
T37 1563-1567 protein denotes CD19
T38 1576-1580 protein denotes AP-1
T39 1601-1610 cell_line denotes 1E8 cells
T40 1625-1629 protein denotes CD19
T41 1647-1659 cell_line denotes BLIN-1 cells
T42 1689-1698 protein denotes NF-kappaB
T43 1730-1734 protein denotes AP-1
T44 1777-1781 protein denotes CD19
T45 1831-1852 protein denotes transcription factors
T46 1968-1973 DNA denotes genes

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 59-77 NP denotes CD19 cross-linking
C2 104-150 NP denotes The B cell-specific cell surface molecule CD19
C3 331-335 NP denotes CD19
C4 470-474 NP denotes CD19
C5 695-750 NP denotes nuclear factor-kappaB (NF-kappaB) transcription factors
C6 770-788 NP denotes CD19 cross-linking
C7 1008-1035 NP denotes CD19 cross-linked 1E8 cells
C8 1070-1093 NP denotes an Elk-1 fusion protein
C9 1134-1154 NP denotes Elk-1 fusion protein
C10 1183-1213 NP denotes CD19 cross-linked BLIN-1 cells
C11 1455-1473 NP denotes CD19 cross-linking
C12 1477-1486 NP denotes 1E8 cells
C13 1601-1610 NP denotes 1E8 cells
C14 1647-1659 NP denotes BLIN-1 cells
C15 1689-1698 NP denotes NF-kappaB
C16 1856-1895 NP denotes juxtaposed stages of B cell development
C17 1896-1900 NP denotes that
R1 C3 C2 coref-ident CD19,The B cell-specific cell surface molecule CD19
R2 C4 C3 coref-ident CD19,CD19
R3 C6 C1 coref-ident CD19 cross-linking,CD19 cross-linking
R4 C9 C8 coref-ident Elk-1 fusion protein,an Elk-1 fusion protein
R5 C11 C6 coref-ident CD19 cross-linking,CD19 cross-linking
R6 C12 C7 coref-ident 1E8 cells,CD19 cross-linked 1E8 cells
R7 C13 C12 coref-ident 1E8 cells,1E8 cells
R8 C14 C10 coref-ident BLIN-1 cells,CD19 cross-linked BLIN-1 cells
R9 C15 C5 coref-ident NF-kappaB,nuclear factor-kappaB (NF-kappaB) transcription factors
R10 C17 C16 coref-relat that,juxtaposed stages of B cell development

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-103 Sentence denotes Differential induction of DNA-binding activities following CD19 cross-linking in human B lineage cells.
S2 104-316 Sentence denotes The B cell-specific cell surface molecule CD19 is expressed at all stages of B cell development, including normal plasma cells, and mediates signal transduction via interaction with cytoplasmic effector proteins.
S3 317-518 Sentence denotes Cross-linking CD19 on early human B lineage cells induces the formation of a CD19/Vav/phosphatidylinositol-3 kinase complex, tyrosine phosphorylation of CD19 and Vav, and activation of the Ras pathway.
S4 519-789 Sentence denotes To further explore the ramifications of CD19 signaling, the current study examined whether phosphorylation of Elk-1, activation of activator protein-1 (AP-1), or activation of nuclear factor-kappaB (NF-kappaB) transcription factors occurred following CD19 cross-linking.
S5 790-994 Sentence denotes The cells used were the BLIN-1 pre-B cell line expressing low levels of cell surface mu heavy chain associated with surrogate light chain and the 1E8 immature B cell line expressing cell surface mu/kappa.
S6 995-1214 Sentence denotes Lysates from CD19 cross-linked 1E8 cells induced robust phosphorylation of an Elk-1 fusion protein in vitro, whereas no phosphorylation of Elk-1 fusion protein occurred using lysates from CD19 cross-linked BLIN-1 cells.
S7 1215-1487 Sentence denotes An electrophoretic mobility shift assay employing AP-1 and NF-kappaB consensus oligonucleotides was used to demonstrate that AP-1 -binding activity increased, while constitutive NF-kappaB-binding activity was not enhanced, following 2 h of CD19 cross-linking in 1E8 cells.
S8 1488-1611 Sentence denotes Supershift experiments revealed that JunD and c-Fos proteins mediated anti-CD19 induced AP-1-binding activity in 1E8 cells.
S9 1612-1752 Sentence denotes In contrast, CD19 cross-linking in BLIN-1 cells resulted in the induction of NF-kappaB, but had no apparent effect on AP-1-binding activity.
S10 1753-1974 Sentence denotes These data suggest that CD19-mediated signal transduction activates different transcription factors at juxtaposed stages of B cell development that may culminate in the activation or suppression of distinct sets of genes.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 26-48 protein_family_or_group denotes DNA-binding activities
T2 59-63 protein_molecule denotes CD19
T3 81-102 cell_type denotes human B lineage cells
T4 108-145 protein_family_or_group denotes B cell-specific cell surface molecule
T5 146-150 protein_molecule denotes CD19
T6 181-199 other_name denotes B cell development
T7 286-315 protein_family_or_group denotes cytoplasmic effector proteins
T8 331-335 protein_molecule denotes CD19
T9 345-366 cell_type denotes human B lineage cells
T10 394-398 protein_molecule denotes CD19
T11 442-450 amino_acid_monomer denotes tyrosine
T12 470-474 protein_molecule denotes CD19
T13 479-482 protein_molecule denotes Vav
T14 506-509 protein_molecule denotes Ras
T15 559-563 protein_molecule denotes CD19
T16 629-634 protein_molecule denotes Elk-1
T17 650-669 protein_molecule denotes activator protein-1
T18 671-675 protein_molecule denotes AP-1
T19 718-727 protein_complex denotes NF-kappaB
T20 729-750 protein_family_or_group denotes transcription factors
T21 770-774 protein_molecule denotes CD19
T22 814-836 cell_line denotes BLIN-1 pre-B cell line
T23 862-889 protein_subunit denotes cell surface mu heavy chain
T24 906-927 protein_subunit denotes surrogate light chain
T25 972-993 protein_molecule denotes cell surface mu/kappa
T26 1008-1012 protein_molecule denotes CD19
T27 1026-1035 cell_line denotes 1E8 cells
T28 1073-1078 protein_molecule denotes Elk-1
T29 1134-1139 protein_molecule denotes Elk-1
T30 1183-1187 protein_molecule denotes CD19
T31 1218-1254 other_name denotes electrophoretic mobility shift assay
T32 1265-1269 protein_molecule denotes AP-1
T33 1274-1283 protein_complex denotes NF-kappaB
T34 1294-1310 polynucleotide denotes oligonucleotides
T35 1340-1344 protein_molecule denotes AP-1
T36 1393-1402 protein_complex denotes NF-kappaB
T37 1455-1459 protein_molecule denotes CD19
T38 1477-1486 cell_line denotes 1E8 cells
T39 1488-1510 other_name denotes Supershift experiments
T40 1525-1529 protein_molecule denotes JunD
T41 1534-1548 protein_molecule denotes c-Fos proteins
T42 1563-1567 protein_molecule denotes CD19
T43 1576-1580 protein_molecule denotes AP-1
T44 1601-1610 cell_line denotes 1E8 cells
T45 1625-1629 protein_molecule denotes CD19
T46 1647-1659 cell_line denotes BLIN-1 cells
T47 1689-1698 protein_complex denotes NF-kappaB
T48 1730-1734 protein_molecule denotes AP-1
T49 1777-1781 protein_molecule denotes CD19
T50 1831-1852 protein_family_or_group denotes transcription factors
T51 1877-1895 other_name denotes B cell development
T52 1968-1973 DNA_domain_or_region denotes genes