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PubMed:9497359 JSONTXT

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GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 64-73 Glycan_Motif denotes T-antigen https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO
T2 212-221 Glycan_Motif denotes T-antigen https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00031MO

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 64-73 http://www.glycoepitope.jp/epitopes/EP0020 denotes T-antigen
T2 212-221 http://www.glycoepitope.jp/epitopes/EP0020 denotes T-antigen

sentences

Id Subject Object Predicate Lexical cue
T1 0-105 Sentence denotes Structure of the complex of Maclura pomifera agglutinin and the T-antigen disaccharide, Galbeta1,3GalNAc.
T2 106-311 Sentence denotes Maclura pomifera agglutinin is a tetrameric plant seed lectin with high affinity for the tumor-associated T-antigen disaccharide, Galbeta1,3GalNAcalpha, and hence for many O-linked glycopeptide structures.
T3 312-394 Sentence denotes Unlike members of most lectin families, it lacks both metal ions and Cys residues.
T4 395-682 Sentence denotes The structure of its complex with Galbeta1,3GalNAc was determined to 2.2 by first using multiwavelength anomalous diffraction with a lead derivative of the native protein, and then using molecular replacement with the unrefined structure as a model to solve the structure of the complex.
T5 683-854 Sentence denotes The subunits share the beta-prism architecture and three-fold pseudo-symmetry of the related lectin jacalin, with the 21-residue beta-chains in the center of the tetramer.
T6 855-931 Sentence denotes Interactions with the GalNAc predominate in the binding of the disaccharide.
T7 932-1119 Sentence denotes It forms a network of H-bonds with only one side chain, from an Asp residue, the amino group of the N-terminal Gly of the alpha-chain, and peptide backbone atoms of two aromatic residues.
T8 1120-1288 Sentence denotes The Gal moiety does not H-bond directly with residues in the same monomer, i.e. there is no true subsite for it, but there are interactions through two water molecules.
T9 1289-1376 Sentence denotes In the crystal, it interacts with residues in the binding site of an adjacent tetramer.
T10 1377-1532 Sentence denotes The minimum energy conformation expected for the disaccharide is retained, despite its mediating the tetramer-tetramer interactions in the crystal packing.
T11 1533-1642 Sentence denotes The resulting lattice is comparable to those seen for complexes of other lectins with branched glycopeptides.
T1 0-105 Sentence denotes Structure of the complex of Maclura pomifera agglutinin and the T-antigen disaccharide, Galbeta1,3GalNAc.
T2 106-311 Sentence denotes Maclura pomifera agglutinin is a tetrameric plant seed lectin with high affinity for the tumor-associated T-antigen disaccharide, Galbeta1,3GalNAcalpha, and hence for many O-linked glycopeptide structures.
T3 312-394 Sentence denotes Unlike members of most lectin families, it lacks both metal ions and Cys residues.
T4 395-682 Sentence denotes The structure of its complex with Galbeta1,3GalNAc was determined to 2.2 by first using multiwavelength anomalous diffraction with a lead derivative of the native protein, and then using molecular replacement with the unrefined structure as a model to solve the structure of the complex.
T5 683-854 Sentence denotes The subunits share the beta-prism architecture and three-fold pseudo-symmetry of the related lectin jacalin, with the 21-residue beta-chains in the center of the tetramer.
T6 855-931 Sentence denotes Interactions with the GalNAc predominate in the binding of the disaccharide.
T7 932-1119 Sentence denotes It forms a network of H-bonds with only one side chain, from an Asp residue, the amino group of the N-terminal Gly of the alpha-chain, and peptide backbone atoms of two aromatic residues.
T8 1120-1288 Sentence denotes The Gal moiety does not H-bond directly with residues in the same monomer, i.e. there is no true subsite for it, but there are interactions through two water molecules.
T9 1289-1376 Sentence denotes In the crystal, it interacts with residues in the binding site of an adjacent tetramer.
T10 1377-1532 Sentence denotes The minimum energy conformation expected for the disaccharide is retained, despite its mediating the tetramer-tetramer interactions in the crystal packing.
T11 1533-1642 Sentence denotes The resulting lattice is comparable to those seen for complexes of other lectins with branched glycopeptides.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 64-73 https://glytoucan.org/Structures/Glycans/G00031MO denotes T-antigen
T2 212-221 https://glytoucan.org/Structures/Glycans/G00031MO denotes T-antigen

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 64-73 Glycan denotes T-antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T2 212-221 Glycan denotes T-antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G00031MO
T3 877-883 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 195-200 Disease denotes tumor http://purl.obolibrary.org/obo/MONDO_0005070

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 877-883 Glycan denotes GalNAc https://api.glycosmos.org/wurcs2image/latest/png/binary/G39738WL

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 64-73 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes T-antigen http://www.glycoepitope.jp/epitopes/EP0020
T2 212-221 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes T-antigen http://www.glycoepitope.jp/epitopes/EP0020

GlyCosmos15-HP

Id Subject Object Predicate Lexical cue hp_id
T1 195-200 Phenotype denotes tumor HP:0002664

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1079-1087 Body_part denotes backbone http://purl.obolibrary.org/obo/UBERON_0001130

GlyCosmos15-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 195-200 Disease denotes tumor MONDO:0005070

GlyCosmos15-Taxon

Id Subject Object Predicate Lexical cue db_id
T1 28-44 Organism denotes Maclura pomifera 3496
T2 106-122 Organism denotes Maclura pomifera 3496

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 64-73 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes T-antigen http://www.glycoepitope.jp/epitopes/EP0020
T2 212-221 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes T-antigen http://www.glycoepitope.jp/epitopes/EP0020

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-105 Sentence denotes Structure of the complex of Maclura pomifera agglutinin and the T-antigen disaccharide, Galbeta1,3GalNAc.
T2 106-311 Sentence denotes Maclura pomifera agglutinin is a tetrameric plant seed lectin with high affinity for the tumor-associated T-antigen disaccharide, Galbeta1,3GalNAcalpha, and hence for many O-linked glycopeptide structures.
T3 312-394 Sentence denotes Unlike members of most lectin families, it lacks both metal ions and Cys residues.
T4 395-682 Sentence denotes The structure of its complex with Galbeta1,3GalNAc was determined to 2.2 by first using multiwavelength anomalous diffraction with a lead derivative of the native protein, and then using molecular replacement with the unrefined structure as a model to solve the structure of the complex.
T5 683-854 Sentence denotes The subunits share the beta-prism architecture and three-fold pseudo-symmetry of the related lectin jacalin, with the 21-residue beta-chains in the center of the tetramer.
T6 855-931 Sentence denotes Interactions with the GalNAc predominate in the binding of the disaccharide.
T7 932-1119 Sentence denotes It forms a network of H-bonds with only one side chain, from an Asp residue, the amino group of the N-terminal Gly of the alpha-chain, and peptide backbone atoms of two aromatic residues.
T8 1120-1288 Sentence denotes The Gal moiety does not H-bond directly with residues in the same monomer, i.e. there is no true subsite for it, but there are interactions through two water molecules.
T9 1289-1376 Sentence denotes In the crystal, it interacts with residues in the binding site of an adjacent tetramer.
T10 1377-1532 Sentence denotes The minimum energy conformation expected for the disaccharide is retained, despite its mediating the tetramer-tetramer interactions in the crystal packing.
T11 1533-1642 Sentence denotes The resulting lattice is comparable to those seen for complexes of other lectins with branched glycopeptides.

GlyCosmos15-Lectin-Jamboree

Id Subject Object Predicate Lexical cue glycosmos_id
T1 783-790 Lectin denotes jacalin GL_002258

Lectin-Jamboree-small

Id Subject Object Predicate Lexical cue glycosmos_id
T1 783-790 Lectin denotes jacalin GL_000029

Lectin-Jamboree-Sentence

Id Subject Object Predicate Lexical cue
T1 0-105 Sentence denotes Structure of the complex of Maclura pomifera agglutinin and the T-antigen disaccharide, Galbeta1,3GalNAc.
T2 106-311 Sentence denotes Maclura pomifera agglutinin is a tetrameric plant seed lectin with high affinity for the tumor-associated T-antigen disaccharide, Galbeta1,3GalNAcalpha, and hence for many O-linked glycopeptide structures.
T3 312-394 Sentence denotes Unlike members of most lectin families, it lacks both metal ions and Cys residues.
T4 395-682 Sentence denotes The structure of its complex with Galbeta1,3GalNAc was determined to 2.2 by first using multiwavelength anomalous diffraction with a lead derivative of the native protein, and then using molecular replacement with the unrefined structure as a model to solve the structure of the complex.
T5 683-854 Sentence denotes The subunits share the beta-prism architecture and three-fold pseudo-symmetry of the related lectin jacalin, with the 21-residue beta-chains in the center of the tetramer.
T6 855-931 Sentence denotes Interactions with the GalNAc predominate in the binding of the disaccharide.
T7 932-1119 Sentence denotes It forms a network of H-bonds with only one side chain, from an Asp residue, the amino group of the N-terminal Gly of the alpha-chain, and peptide backbone atoms of two aromatic residues.
T8 1120-1288 Sentence denotes The Gal moiety does not H-bond directly with residues in the same monomer, i.e. there is no true subsite for it, but there are interactions through two water molecules.
T9 1289-1376 Sentence denotes In the crystal, it interacts with residues in the binding site of an adjacent tetramer.
T10 1377-1532 Sentence denotes The minimum energy conformation expected for the disaccharide is retained, despite its mediating the tetramer-tetramer interactions in the crystal packing.
T11 1533-1642 Sentence denotes The resulting lattice is comparable to those seen for complexes of other lectins with branched glycopeptides.

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 1079-1087 Body_part denotes backbone FMA:13478

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 28-44 OrganismTaxon denotes Maclura pomifera 3496
T2 106-122 OrganismTaxon denotes Maclura pomifera 3496

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1079-1087 Body_part denotes backbone http://purl.obolibrary.org/obo/UBERON_0001130

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 195-200 Phenotype denotes tumor HP:0002664

GlyCosmos15-Lectin

Id Subject Object Predicate Lexical cue
T1 28-55 GL_000037 denotes Maclura pomifera agglutinin
T2 106-133 GL_000037 denotes Maclura pomifera agglutinin
T3 783-790 GL_000029 denotes jacalin

Lectin_test

Id Subject Object Predicate Lexical cue
T1 28-55 GL_000037 denotes Maclura pomifera agglutinin
T2 106-133 GL_000037 denotes Maclura pomifera agglutinin
T3 783-790 GL_000029 denotes jacalin