PubMed:9463318 JSONTXT

Annnotations TAB JSON ListView MergeView

{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/9463318","sourcedb":"PubMed","sourceid":"9463318","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/9463318","text":"The DMPK gene of severely affected myotonic dystrophy patients is hypermethylated proximal to the largely expanded CTG repeat.\nUsing methylation-sensitive restriction enzymes, we characterized the methylation pattern on the 5' side of the CTG repeat in the DMPK gene of normal individuals and of patients affected with myotonic dystrophy, showing expansions of the repetitive sequence. The gene segment analyzed corresponds to the genomic SacI-HindIII fragment carrying exons 11-15. There is constitutive methylation in intron 12 at restriction sites of SacII and HhaI, localized 1,159-1,232 bp upstream of the CTG repeat, whereas most, if not all, of the other sites of SacII, HhaI, and HpaII in this region are unmethylated, in normal individuals and most of the patients. In a number of young and severely affected patients, however, complete methylation of these restriction sites was found in the mutated allele. In most of these patients, the onset of the disease was congenital. Preliminary in vivo footprinting data gave evidence for protein-DNA contact in normal genes at an Sp1 consensus binding site upstream of the CTG repeat and for a significant reduction of this interaction in cells with a hypermethylated DMPK gene.","tracks":[{"project":"NCBIDiseaseCorpus","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"Modifier:D009223"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease:D009223"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBIDiseaseCorpus"},{"subj":"T2","pred":"source","obj":"NCBIDiseaseCorpus"}]},{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":257,"end":261},"obj":"gene:1760"},{"id":"T1","span":{"begin":319,"end":337},"obj":"disease:C0027126"},{"id":"T2","span":{"begin":257,"end":261},"obj":"gene:1760"},{"id":"T3","span":{"begin":319,"end":337},"obj":"disease:C0410226"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"},{"id":"R2","pred":"associated_with","subj":"T2","obj":"T3"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T0","pred":"source","obj":"DisGeNET"},{"subj":"T1","pred":"source","obj":"DisGeNET"},{"subj":"T2","pred":"source","obj":"DisGeNET"},{"subj":"T3","pred":"source","obj":"DisGeNET"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"9463318-0#4#8#gene1760","span":{"begin":4,"end":8},"obj":"gene1760"},{"id":"9463318-0#35#53#diseaseC0027126","span":{"begin":35,"end":53},"obj":"diseaseC0027126"}],"relations":[{"id":"4#8#gene176035#53#diseaseC0027126","pred":"associated_with","subj":"9463318-0#4#8#gene1760","obj":"9463318-0#35#53#diseaseC0027126"}],"attributes":[{"subj":"9463318-0#4#8#gene1760","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"9463318-0#35#53#diseaseC0027126","pred":"source","obj":"DisGeNET5_gene_disease"}]},{"project":"NCBI-Disease-Test","denotations":[{"id":"T712","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T713","span":{"begin":319,"end":337},"obj":"SpecificDisease"}],"attributes":[{"id":"A712","pred":"database_id","subj":"T712","obj":"D009223"},{"id":"A713","pred":"database_id","subj":"T713","obj":"D009223"},{"subj":"T712","pred":"source","obj":"NCBI-Disease-Test"},{"subj":"T713","pred":"source","obj":"NCBI-Disease-Test"}]},{"project":"NCBI-Disease-Test-Assistant-Knowledge","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"SpecificDisease"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":962,"end":969},"obj":"SpecificDisease"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Test-Assistant-Knowledge"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Test-Assistant-Knowledge"},{"subj":"T3","pred":"source","obj":"NCBI-Disease-Test-Assistant-Knowledge"}]},{"project":"NCBI-Disease-Test-4o-NoGuidelineInPrompt","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"SpecificDisease"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":962,"end":969},"obj":"SpecificDisease"},{"id":"T4","span":{"begin":974,"end":984},"obj":"Modifier"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Test-4o-NoGuidelineInPrompt"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Test-4o-NoGuidelineInPrompt"},{"subj":"T3","pred":"source","obj":"NCBI-Disease-Test-4o-NoGuidelineInPrompt"},{"subj":"T4","pred":"source","obj":"NCBI-Disease-Test-4o-NoGuidelineInPrompt"}]},{"project":"NCBI-Disease-Test-4o-GuidelineInPrompt","denotations":[{"id":"T1","span":{"begin":4,"end":53},"obj":"SpecificDisease"},{"id":"T2","span":{"begin":257,"end":337},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":962,"end":969},"obj":"SpecificDisease"},{"id":"T4","span":{"begin":1222,"end":1231},"obj":"SpecificDisease"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Test-4o-GuidelineInPrompt"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Test-4o-GuidelineInPrompt"},{"subj":"T3","pred":"source","obj":"NCBI-Disease-Test-4o-GuidelineInPrompt"},{"subj":"T4","pred":"source","obj":"NCBI-Disease-Test-4o-GuidelineInPrompt"}]},{"project":"NCBI-Disease-Corpus-UpdatedGuideline","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"SpecificDisease"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":962,"end":969},"obj":"SpecificDisease"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-UpdatedGuideline"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-UpdatedGuideline"},{"subj":"T3","pred":"source","obj":"NCBI-Disease-Corpus-UpdatedGuideline"}]},{"project":"NCBI-Disease-Corpus-humanintheloop","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":974,"end":984},"obj":"Modifier"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-humanintheloop"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-humanintheloop"},{"subj":"T3","pred":"source","obj":"NCBI-Disease-Corpus-humanintheloop"}]},{"project":"NCBI-Disease-Corpus-rezarta1","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":962,"end":969},"obj":"DiseaseClass"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-rezarta1"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-rezarta1"},{"subj":"T3","pred":"source","obj":"NCBI-Disease-Corpus-rezarta1"}]},{"project":"NCBI-Disease-Corpus-All","denotations":[{"id":"T712","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T713","span":{"begin":319,"end":337},"obj":"SpecificDisease"}],"attributes":[{"id":"A712","pred":"database_id","subj":"T712","obj":"D009223"},{"id":"A713","pred":"database_id","subj":"T713","obj":"D009223"},{"subj":"T712","pred":"source","obj":"NCBI-Disease-Corpus-All"},{"subj":"T713","pred":"source","obj":"NCBI-Disease-Corpus-All"}]},{"project":"NCBI-Disease-Corpus-2stage-All","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"SpecificDisease"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":974,"end":984},"obj":"DiseaseClass"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-2stage-All"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-2stage-All"},{"subj":"T3","pred":"source","obj":"NCBI-Disease-Corpus-2stage-All"}]},{"project":"NCBI-Disease-Corpus-rezarta-All","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":962,"end":969},"obj":"DiseaseClass"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-rezarta-All"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-rezarta-All"},{"subj":"T3","pred":"source","obj":"NCBI-Disease-Corpus-rezarta-All"}]},{"project":"NCBI-Disease-Corpus-4oGuideline-All","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"SpecificDisease"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":962,"end":969},"obj":"Modifier"},{"id":"T4","span":{"begin":974,"end":984},"obj":"Modifier"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-4oGuideline-All"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-4oGuideline-All"},{"subj":"T3","pred":"source","obj":"NCBI-Disease-Corpus-4oGuideline-All"},{"subj":"T4","pred":"source","obj":"NCBI-Disease-Corpus-4oGuideline-All"}]},{"project":"NCBI-Disease-Corpus-Simple-All","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"SpecificDisease"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":962,"end":969},"obj":"SpecificDisease"},{"id":"T4","span":{"begin":974,"end":984},"obj":"Modifier"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-Simple-All"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-Simple-All"},{"subj":"T3","pred":"source","obj":"NCBI-Disease-Corpus-Simple-All"},{"subj":"T4","pred":"source","obj":"NCBI-Disease-Corpus-Simple-All"}]},{"project":"NCBI-Disease-Corpus-o3-2","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T2","span":{"begin":319,"end":337},"obj":"Modifier"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-o3-2"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-o3-2"}]},{"project":"NCBI-Disease-Corpus-high-o3-1","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T2","span":{"begin":319,"end":337},"obj":"Modifier"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-high-o3-1"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-high-o3-1"}]},{"project":"NCBI-Disease-Corpus-high-o3-2","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"SpecificDisease"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-high-o3-2"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-high-o3-2"}]},{"project":"12345","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T2","span":{"begin":319,"end":337},"obj":"Modifier"},{"id":"T3","span":{"begin":962,"end":969},"obj":"SpecificDisease"}],"attributes":[{"subj":"T1","pred":"source","obj":"12345"},{"subj":"T2","pred":"source","obj":"12345"},{"subj":"T3","pred":"source","obj":"12345"}]},{"project":"123456","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":974,"end":984},"obj":"Modifier"}],"attributes":[{"subj":"T1","pred":"source","obj":"123456"},{"subj":"T2","pred":"source","obj":"123456"},{"subj":"T3","pred":"source","obj":"123456"}]},{"project":"NCBI-Disease-Corpus-GPT5-withguidelines","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-GPT5-withguidelines"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-GPT5-withguidelines"}]},{"project":"NCBI-Disease-Corpus-GPT5-noguidelines","denotations":[{"id":"T1","span":{"begin":17,"end":34},"obj":"Modifier"},{"id":"T2","span":{"begin":35,"end":53},"obj":"SpecificDisease"},{"id":"T3","span":{"begin":319,"end":337},"obj":"SpecificDisease"},{"id":"T4","span":{"begin":790,"end":795},"obj":"Modifier"},{"id":"T5","span":{"begin":800,"end":817},"obj":"Modifier"},{"id":"T6","span":{"begin":962,"end":969},"obj":"DiseaseClass"},{"id":"T7","span":{"begin":974,"end":984},"obj":"Modifier"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-GPT5-noguidelines"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-GPT5-noguidelines"},{"subj":"T3","pred":"source","obj":"NCBI-Disease-Corpus-GPT5-noguidelines"},{"subj":"T4","pred":"source","obj":"NCBI-Disease-Corpus-GPT5-noguidelines"},{"subj":"T5","pred":"source","obj":"NCBI-Disease-Corpus-GPT5-noguidelines"},{"subj":"T6","pred":"source","obj":"NCBI-Disease-Corpus-GPT5-noguidelines"},{"subj":"T7","pred":"source","obj":"NCBI-Disease-Corpus-GPT5-noguidelines"}]},{"project":"NCBI-Disease-Corpus-GPT5-guidelineprompt","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-GPT5-guidelineprompt"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-GPT5-guidelineprompt"}]},{"project":"NCBI-Disease-Corpus-Moderated1","denotations":[{"id":"T1","span":{"begin":35,"end":53},"obj":"Modifier"},{"id":"T2","span":{"begin":319,"end":337},"obj":"SpecificDisease"}],"attributes":[{"subj":"T1","pred":"source","obj":"NCBI-Disease-Corpus-Moderated1"},{"subj":"T2","pred":"source","obj":"NCBI-Disease-Corpus-Moderated1"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"NCBIDiseaseCorpus","color":"#ec9e93","default":true},{"id":"DisGeNET","color":"#93a1ec"},{"id":"DisGeNET5_gene_disease","color":"#bbec93"},{"id":"NCBI-Disease-Test","color":"#ec93d5"},{"id":"NCBI-Disease-Test-Assistant-Knowledge","color":"#93ece9"},{"id":"NCBI-Disease-Test-4o-NoGuidelineInPrompt","color":"#ecce93"},{"id":"NCBI-Disease-Test-4o-GuidelineInPrompt","color":"#b493ec"},{"id":"NCBI-Disease-Corpus-UpdatedGuideline","color":"#93ec9a"},{"id":"NCBI-Disease-Corpus-humanintheloop","color":"#ec93a5"},{"id":"NCBI-Disease-Corpus-rezarta1","color":"#93bfec"},{"id":"NCBI-Disease-Corpus-All","color":"#d9ec93"},{"id":"NCBI-Disease-Corpus-2stage-All","color":"#e593ec"},{"id":"NCBI-Disease-Corpus-rezarta-All","color":"#93eccb"},{"id":"NCBI-Disease-Corpus-4oGuideline-All","color":"#ecb193"},{"id":"NCBI-Disease-Corpus-Simple-All","color":"#9793ec"},{"id":"NCBI-Disease-Corpus-o3-2","color":"#a9ec93"},{"id":"NCBI-Disease-Corpus-high-o3-1","color":"#ec93c3"},{"id":"NCBI-Disease-Corpus-high-o3-2","color":"#93ddec"},{"id":"12345","color":"#ece193"},{"id":"123456","color":"#c793ec"},{"id":"NCBI-Disease-Corpus-GPT5-withguidelines","color":"#93ecad"},{"id":"NCBI-Disease-Corpus-GPT5-noguidelines","color":"#ec9393"},{"id":"NCBI-Disease-Corpus-GPT5-guidelineprompt","color":"#93acec"},{"id":"NCBI-Disease-Corpus-Moderated1","color":"#c7ec93"}]}]}}