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DisGeNET

Id Subject Object Predicate Lexical cue
T0 958-963 gene:728340 denotes TFIIH
T1 918-920 disease:C0043346 denotes XP
T2 958-963 gene:404672 denotes TFIIH
T3 918-920 disease:C0043346 denotes XP
T4 958-963 gene:2071 denotes TFIIH
T5 918-920 disease:C0043346 denotes XP
T6 958-963 gene:2068 denotes TFIIH
T7 918-920 disease:C0043346 denotes XP
T8 958-963 gene:2968 denotes TFIIH
T9 918-920 disease:C0043346 denotes XP
T10 958-963 gene:2966 denotes TFIIH
T11 918-920 disease:C0043346 denotes XP
T12 958-963 gene:2967 denotes TFIIH
T13 918-920 disease:C0043346 denotes XP
T14 958-963 gene:730394 denotes TFIIH
T15 918-920 disease:C0043346 denotes XP
T16 958-963 gene:2965 denotes TFIIH
T17 918-920 disease:C0043346 denotes XP
T18 1341-1346 gene:2968 denotes TFIIH
T19 1384-1386 disease:C0043346 denotes XP
T20 1341-1346 gene:730394 denotes TFIIH
T21 1384-1386 disease:C0043346 denotes XP
T22 1341-1346 gene:2967 denotes TFIIH
T23 1384-1386 disease:C0043346 denotes XP
T24 1341-1346 gene:2966 denotes TFIIH
T25 1384-1386 disease:C0043346 denotes XP
T26 1341-1346 gene:2965 denotes TFIIH
T27 1384-1386 disease:C0043346 denotes XP
T28 1341-1346 gene:2068 denotes TFIIH
T29 1384-1386 disease:C0043346 denotes XP
T30 1341-1346 gene:2071 denotes TFIIH
T31 1384-1386 disease:C0043346 denotes XP
T32 1341-1346 gene:404672 denotes TFIIH
T33 1384-1386 disease:C0043346 denotes XP
T34 1341-1346 gene:728340 denotes TFIIH
T35 1384-1386 disease:C0043346 denotes XP
T36 1341-1346 gene:728340 denotes TFIIH
T37 1376-1378 disease:C0043346 denotes XP
T38 1341-1346 gene:404672 denotes TFIIH
T39 1376-1378 disease:C0043346 denotes XP
T40 1341-1346 gene:2071 denotes TFIIH
T41 1376-1378 disease:C0043346 denotes XP
T42 1341-1346 gene:2068 denotes TFIIH
T43 1376-1378 disease:C0043346 denotes XP
T44 1341-1346 gene:2968 denotes TFIIH
T45 1376-1378 disease:C0043346 denotes XP
T46 1341-1346 gene:2966 denotes TFIIH
T47 1376-1378 disease:C0043346 denotes XP
T48 1341-1346 gene:2967 denotes TFIIH
T49 1376-1378 disease:C0043346 denotes XP
T50 1341-1346 gene:730394 denotes TFIIH
T51 1376-1378 disease:C0043346 denotes XP
T52 1341-1346 gene:2965 denotes TFIIH
T53 1376-1378 disease:C0043346 denotes XP
R1 T0 T1 associated_with TFIIH,XP
R2 T2 T3 associated_with TFIIH,XP
R3 T4 T5 associated_with TFIIH,XP
R4 T6 T7 associated_with TFIIH,XP
R5 T8 T9 associated_with TFIIH,XP
R6 T10 T11 associated_with TFIIH,XP
R7 T12 T13 associated_with TFIIH,XP
R8 T14 T15 associated_with TFIIH,XP
R9 T16 T17 associated_with TFIIH,XP
R10 T18 T19 associated_with TFIIH,XP
R11 T20 T21 associated_with TFIIH,XP
R12 T22 T23 associated_with TFIIH,XP
R13 T24 T25 associated_with TFIIH,XP
R14 T26 T27 associated_with TFIIH,XP
R15 T28 T29 associated_with TFIIH,XP
R16 T30 T31 associated_with TFIIH,XP
R17 T32 T33 associated_with TFIIH,XP
R18 T34 T35 associated_with TFIIH,XP
R19 T36 T37 associated_with TFIIH,XP
R20 T38 T39 associated_with TFIIH,XP
R21 T40 T41 associated_with TFIIH,XP
R22 T42 T43 associated_with TFIIH,XP
R23 T44 T45 associated_with TFIIH,XP
R24 T46 T47 associated_with TFIIH,XP
R25 T48 T49 associated_with TFIIH,XP
R26 T50 T51 associated_with TFIIH,XP
R27 T52 T53 associated_with TFIIH,XP

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 38-55 protein denotes RNA polymerase II
T2 59-77 cell_type denotes cell-free extracts
T3 292-295 DNA denotes XPA
T4 304-307 DNA denotes XPG
T5 323-340 DNA denotes XPB and XPD genes
T6 380-408 protein denotes general transcription factor
T7 410-415 protein denotes TFIIH
T8 507-524 protein denotes RNA polymerase II
T9 553-568 DNA denotes XPB or XPD gene
T10 909-928 cell_line denotes XP-B and XP-D cells
T11 958-963 protein denotes TFIIH
T12 988-1022 cell_line denotes XP-B and XP-D lymphoblastoid cells
T13 1073-1103 DNA denotes adenovirus major late promoter
T14 1184-1218 cell_line denotes XP-B and XP-D lymphoblastoid cells
T15 1341-1346 protein denotes TFIIH

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 38-55 NP denotes RNA polymerase II
C2 83-119 NP denotes xeroderma pigmentosum groups B and D
C3 123-159 NP denotes an optimized RNA transcription assay
C4 161-198 NP denotes The human autosomal recessive disease
C5 200-226 NP denotes xeroderma pigmentosum (XP)
C6 268-279 NP denotes seven genes
C7 312-317 NP denotes these
C8 319-340 NP denotes the XPB and XPD genes
C9 348-356 NP denotes proteins
C10 357-361 NP denotes that
C11 378-408 NP denotes a general transcription factor
C12 410-415 NP denotes TFIIH
C13 434-466 NP denotes nucleotide excision repair (NER)
C14 507-524 NP denotes RNA polymerase II
C15 577-580 NP denotes NER
C16 738-742 NP denotes XP-B
C17 746-750 NP denotes XP-D
C18 769-815 NP denotes an optimized cell-free RNA transcription assay
C20 853-857 NP denotes XP-B
C21 862-866 NP denotes XP-D
C19 853-866 NP denotes XP-B and XP-D
C22 958-963 NP denotes TFIIH
C23 988-1022 NP denotes XP-B and XP-D lymphoblastoid cells
C24 1033-1103 NP denotes similar transcription activity from the adenovirus major late promoter
C25 1121-1125 NP denotes that
C26 1180-1218 NP denotes the XP-B and XP-D lymphoblastoid cells
C27 1341-1346 NP denotes TFIIH
C28 1411-1436 NP denotes a 'conditional phenotype'
C29 1437-1441 NP denotes that
R1 C5 C4 coref-appos xeroderma pigmentosum (XP),The human autosomal recessive disease
R2 C7 C6 coref-pron these,seven genes
R3 C8 C2 coref-ident the XPB and XPD genes,xeroderma pigmentosum groups B and D
R4 C10 C9 coref-relat that,proteins
R5 C12 C11 coref-appos TFIIH,a general transcription factor
R6 C14 C1 coref-ident RNA polymerase II,RNA polymerase II
R7 C15 C13 coref-ident NER,nucleotide excision repair (NER)
R8 C18 C3 coref-ident an optimized cell-free RNA transcription assay,an optimized RNA transcription assay
R9 C20 C16 coref-ident XP-B,XP-B
R10 C21 C17 coref-ident XP-D,XP-D
R11 C19 C8 coref-ident XP-B and XP-D,the XPB and XPD genes
R12 C22 C12 coref-ident TFIIH,TFIIH
R13 C25 C24 coref-pron that,similar transcription activity from the adenovirus major late promoter
R14 C26 C23 coref-ident the XP-B and XP-D lymphoblastoid cells,XP-B and XP-D lymphoblastoid cells
R15 C27 C22 coref-ident TFIIH,TFIIH
R16 C29 C28 coref-relat that,a 'conditional phenotype'

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
9427533-3#34#37#gene2068 560-563 gene2068 denotes XPD
9427533-3#121#131#diseaseC0037286 647-657 diseaseC0037286 denotes skin tumor
34#37#gene2068121#131#diseaseC0037286 9427533-3#34#37#gene2068 9427533-3#121#131#diseaseC0037286 associated_with XPD,skin tumor

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-160 Sentence denotes Competent transcription initiation by RNA polymerase II in cell-free extracts from xeroderma pigmentosum groups B and D in an optimized RNA transcription assay.
S2 161-308 Sentence denotes The human autosomal recessive disease, xeroderma pigmentosum (XP), can result from mutations in any one of seven genes, designated XPA through XPG.
S3 309-525 Sentence denotes Of these, the XPB and XPD genes encode proteins that are subunits of a general transcription factor, TFIIH, involved in both nucleotide excision repair (NER) and initiation of mRNA transcription by RNA polymerase II.
S4 526-668 Sentence denotes In humans, mutation of the XPB or XPD gene impairs NER, resulting in hyper-sensitivity to sunlight and greatly increased skin tumor formation.
S5 669-751 Sentence denotes However, no transcription deficiency has been demonstrated in either XP-B or XP-D.
S6 752-867 Sentence denotes We have employed an optimized cell-free RNA transcription assay to analyze transcription activity of XP-B and XP-D.
S7 868-964 Sentence denotes Although the growth rate was normal, the XP-B and XP-D cells contained reduced amounts of TFIIH.
S8 965-1156 Sentence denotes Extracts prepared from XP-B and XP-D lymphoblastoid cells exhibited similar transcription activity from the adenovirus major late promoter when compared to that in extracts from normal cells.
S9 1157-1267 Sentence denotes Thus, we conclude that the XP-B and XP-D lymphoblastoid cells do not have impaired RNA transcription activity.
S10 1268-1526 Sentence denotes We consider the possible consequences of the reduced cellular content of TFIIH for the clinical symptoms in XP-B or XP-D patients, and discuss a 'conditional phenotype' that may involve an impairment of cellular function only under certain growth conditions.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-34 other_name denotes Competent transcription initiation
T2 38-55 protein_complex denotes RNA polymerase II
T3 59-77 cell_type denotes cell-free extracts
T4 83-104 other_name denotes xeroderma pigmentosum
T5 165-198 other_name denotes human autosomal recessive disease
T6 200-221 other_name denotes xeroderma pigmentosum
T7 223-225 other_name denotes XP
T8 292-295 DNA_domain_or_region denotes XPA
T9 304-307 DNA_domain_or_region denotes XPG
T10 380-408 protein_molecule denotes general transcription factor
T11 410-415 protein_molecule denotes TFIIH
T12 434-460 other_name denotes nucleotide excision repair
T13 462-465 other_name denotes NER
T14 485-503 other_name denotes mRNA transcription
T15 507-524 protein_complex denotes RNA polymerase II
T16 529-535 multi_cell denotes humans
T17 577-580 other_name denotes NER
T18 681-705 other_name denotes transcription deficiency
T19 738-742 other_name denotes XP-B
T20 746-750 other_name denotes XP-D
T21 782-815 other_name denotes cell-free RNA transcription assay
T22 853-857 other_name denotes XP-B
T23 862-866 other_name denotes XP-D
T24 958-963 protein_molecule denotes TFIIH
T25 1041-1063 other_name denotes transcription activity
T26 1073-1103 DNA_domain_or_region denotes adenovirus major late promoter
T27 1240-1266 other_name denotes RNA transcription activity
T28 1341-1346 protein_molecule denotes TFIIH
T29 1508-1525 other_name denotes growth conditions

HP-phenotype

Id Subject Object Predicate Lexical cue hp_id
T1 601-624 Phenotype denotes sensitivity to sunlight HP:0000992
T2 647-657 Phenotype denotes skin tumor HP:0008069

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 83-113 Disease denotes xeroderma pigmentosum groups B http://purl.obolibrary.org/obo/MONDO_0012531
T2 171-198 Disease denotes autosomal recessive disease http://purl.obolibrary.org/obo/MONDO_0006025
T3 200-221 Disease denotes xeroderma pigmentosum http://purl.obolibrary.org/obo/MONDO_0019600
T4 223-225 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T5 292-295 Disease denotes XPA http://purl.obolibrary.org/obo/MONDO_0010210
T6 304-307 Disease denotes XPG http://purl.obolibrary.org/obo/MONDO_0010216
T7 323-326 Disease denotes XPB http://purl.obolibrary.org/obo/MONDO_0012531
T8 331-334 Disease denotes XPD http://purl.obolibrary.org/obo/MONDO_0010212
T9 553-556 Disease denotes XPB http://purl.obolibrary.org/obo/MONDO_0012531
T10 560-563 Disease denotes XPD http://purl.obolibrary.org/obo/MONDO_0010212
T11 595-612 Disease denotes hyper-sensitivity http://purl.obolibrary.org/obo/MONDO_0000605|http://purl.obolibrary.org/obo/MONDO_0005271
T13 647-657 Disease denotes skin tumor http://purl.obolibrary.org/obo/MONDO_0002531
T14 738-742 Disease denotes XP-B http://purl.obolibrary.org/obo/MONDO_0012531
T15 738-740 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T16 746-750 Disease denotes XP-D http://purl.obolibrary.org/obo/MONDO_0010212
T17 746-748 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T18 853-857 Disease denotes XP-B http://purl.obolibrary.org/obo/MONDO_0012531
T19 853-855 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T20 862-866 Disease denotes XP-D http://purl.obolibrary.org/obo/MONDO_0010212
T21 862-864 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T22 909-913 Disease denotes XP-B http://purl.obolibrary.org/obo/MONDO_0012531
T23 909-911 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T24 918-922 Disease denotes XP-D http://purl.obolibrary.org/obo/MONDO_0010212
T25 918-920 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T26 988-992 Disease denotes XP-B http://purl.obolibrary.org/obo/MONDO_0012531
T27 988-990 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T28 997-1001 Disease denotes XP-D http://purl.obolibrary.org/obo/MONDO_0010212
T29 997-999 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T30 1184-1188 Disease denotes XP-B http://purl.obolibrary.org/obo/MONDO_0012531
T31 1184-1186 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T32 1193-1197 Disease denotes XP-D http://purl.obolibrary.org/obo/MONDO_0010212
T33 1193-1195 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T34 1376-1380 Disease denotes XP-B http://purl.obolibrary.org/obo/MONDO_0012531
T35 1376-1378 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600
T36 1384-1388 Disease denotes XP-D http://purl.obolibrary.org/obo/MONDO_0010212
T37 1384-1386 Disease denotes XP http://purl.obolibrary.org/obo/MONDO_0019600

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 165-170 OrganismTaxon denotes human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 647-651 Body_part denotes skin http://purl.obolibrary.org/obo/UBERON_0000014|http://purl.obolibrary.org/obo/UBERON_0001003|http://purl.obolibrary.org/obo/UBERON_0002097|http://purl.obolibrary.org/obo/UBERON_0002199

Anatomy-MAT

Id Subject Object Predicate Lexical cue mat_id
T1 647-651 Body_part denotes skin http://purl.obolibrary.org/obo/MAT_0000284

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 921-928 Cell denotes D cells http://purl.obolibrary.org/obo/CL:0000502