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PubMed:9400934 JSONTXT

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NCBI-Disease-Corpus-GPT5-withguidelines

Id Subject Object Predicate Lexical cue
T1 46-73 SpecificDisease denotes intracranial retinoblastoma
T2 138-165 SpecificDisease denotes intracranial retinoblastoma
T3 199-225 CompositeMention denotes pineal and retinal tumours
T4 350-380 CompositeMention denotes retinal and the pineal tumours
T5 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-GPT5-noguidelines

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 199-225 CompositeMention denotes pineal and retinal tumours
T4 346-380 CompositeMention denotes the retinal and the pineal tumours
T5 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-GPT5-guidelineprompt

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 199-225 CompositeMention denotes pineal and retinal tumours
T4 350-380 CompositeMention denotes retinal and the pineal tumours
T5 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-Moderated1

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 199-225 CompositeMention denotes pineal and retinal tumours
T4 350-380 CompositeMention denotes retinal and the pineal tumours
T5 755-769 SpecificDisease denotes retinoblastoma

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-74 Sentence denotes The RB1 gene mutation in a child with ectopic intracranial retinoblastoma.
TextSentencer_T2 75-241 Sentence denotes The RB1 gene mutation was investigated in a child with ectopic intracranial retinoblastoma using DNA obtained from both the pineal and retinal tumours of the patient.
TextSentencer_T3 242-381 Sentence denotes A nonsense mutation in exon 17 (codon 556) of the RB1 gene was found to be present homozygously in both the retinal and the pineal tumours.
TextSentencer_T4 382-520 Sentence denotes The same mutation was present heterozygously in the DNA from the constitutional cells of the patient, proving it to be of germline origin.
TextSentencer_T5 521-606 Sentence denotes The initial mutation was shown to have occurred in the paternally derived RB1 allele.
TextSentencer_T6 607-770 Sentence denotes The mutation is in an area of the gene that encodes the protein-binding region known as the 'pocket' region and has been detected in other cases of retinoblastoma.
T1 0-74 Sentence denotes The RB1 gene mutation in a child with ectopic intracranial retinoblastoma.
T2 75-241 Sentence denotes The RB1 gene mutation was investigated in a child with ectopic intracranial retinoblastoma using DNA obtained from both the pineal and retinal tumours of the patient.
T3 242-381 Sentence denotes A nonsense mutation in exon 17 (codon 556) of the RB1 gene was found to be present homozygously in both the retinal and the pineal tumours.
T4 382-520 Sentence denotes The same mutation was present heterozygously in the DNA from the constitutional cells of the patient, proving it to be of germline origin.
T5 521-606 Sentence denotes The initial mutation was shown to have occurred in the paternally derived RB1 allele.
T6 607-770 Sentence denotes The mutation is in an area of the gene that encodes the protein-binding region known as the 'pocket' region and has been detected in other cases of retinoblastoma.

DisGeNET

Id Subject Object Predicate Lexical cue
T0 79-82 gene:5925 denotes RB1
T1 151-165 disease:C0035335 denotes retinoblastoma
R1 T0 T1 associated_with RB1,retinoblastoma

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
9400934-0#4#7#gene5925 79-82 gene5925 denotes RB1
9400934-0#59#73#diseaseC0035335 151-165 diseaseC0035335 denotes retinoblastoma
4#7#gene592559#73#diseaseC0035335 9400934-0#4#7#gene5925 9400934-0#59#73#diseaseC0035335 associated_with RB1,retinoblastoma

PubCasesHPO

Id Subject Object Predicate Lexical cue
TI1 59-73 HP:0009919 denotes retinoblastoma
AB1 151-165 HP:0009919 denotes retinoblastoma
AB2 755-769 HP:0009919 denotes retinoblastoma

PubCasesORDO

Id Subject Object Predicate Lexical cue
TI1 59-73 ORDO:790 denotes retinoblastoma
AB1 151-165 ORDO:790 denotes retinoblastoma
AB2 755-769 ORDO:790 denotes retinoblastoma

NCBIDiseaseCorpus

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease:D012175 denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease:D012175 denotes ectopic intracranial retinoblastoma
T3 199-225 CompositeMention:D019572|D010871 denotes pineal and retinal tumours
T4 350-380 CompositeMention:D019572|D010871 denotes retinal and the pineal tumours
T5 755-769 SpecificDisease:D012175 denotes retinoblastoma

NCBI-Disease-Test

Id Subject Object Predicate Lexical cue database_id
T400 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma D012175
T401 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma D012175
T402 199-225 CompositeMention denotes pineal and retinal tumours D019572|D010871
T403 350-380 CompositeMention denotes retinal and the pineal tumours D019572|D010871
T404 755-769 SpecificDisease denotes retinoblastoma D012175

NCBI-Disease-Test-Assistant-Knowledge

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Test-4o-NoGuidelineInPrompt

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-o3-2

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-high-o3-1

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-high-o3-2

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Test-4o-GuidelineInPrompt

Id Subject Object Predicate Lexical cue
T1 4-21 SpecificDisease denotes RB1 gene mutation
T2 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 79-96 SpecificDisease denotes RB1 gene mutation
T4 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T5 199-225 CompositeMention denotes pineal and retinal tumours
T6 292-300 SpecificDisease denotes RB1 gene
T7 350-380 CompositeMention denotes retinal and the pineal tumours
T8 595-605 SpecificDisease denotes RB1 allele
T9 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-UpdatedGuideline

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-humanintheloop

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-rezarta1

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-All

Id Subject Object Predicate Lexical cue database_id
T400 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma D012175
T401 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma D012175
T402 199-225 CompositeMention denotes pineal and retinal tumours D019572|D010871
T403 350-380 CompositeMention denotes retinal and the pineal tumours D019572|D010871
T404 755-769 SpecificDisease denotes retinoblastoma D012175

NCBI-Disease-Corpus-2stage-All

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-rezarta-All

Id Subject Object Predicate Lexical cue
T1 59-73 SpecificDisease denotes retinoblastoma
T2 151-165 SpecificDisease denotes retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-4oGuideline-All

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

NCBI-Disease-Corpus-Simple-All

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

123456

Id Subject Object Predicate Lexical cue
T1 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T2 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 755-769 SpecificDisease denotes retinoblastoma

12345

Id Subject Object Predicate Lexical cue
T1 4-7 Modifier denotes RB1
T2 38-73 SpecificDisease denotes ectopic intracranial retinoblastoma
T3 79-82 Modifier denotes RB1
T4 130-165 SpecificDisease denotes ectopic intracranial retinoblastoma
T5 292-295 Modifier denotes RB1
T6 595-598 Modifier denotes RB1
T7 755-769 SpecificDisease denotes retinoblastoma