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PubMed:9366415 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 20-24 protein denotes CD40
T2 59-81 protein denotes nuclear factor-kappa B
T3 96-109 cell_type denotes B lymphocytes
T4 111-115 protein denotes CD40
T5 129-136 cell_type denotes B cells
T6 203-207 protein denotes CD40
T7 328-350 protein denotes cell surface molecules
T8 381-395 cell_type denotes memory B cells
T9 452-456 protein denotes CD40
T10 494-504 protein denotes NF-kappa B
T11 506-516 protein denotes NF-kappa B
T12 533-537 protein denotes CD40
T13 571-581 protein denotes NF-kappa B
T14 639-649 protein denotes NF-kappa B
T15 674-700 cell_line denotes mouse B cell transfectants
T16 712-742 protein denotes wild-type or mutant human CD40
T17 756-779 protein denotes CD40 cytoplasmic domain
T18 819-871 protein denotes 10-amino acid CD40 cytoplasmic signaling determinant
T19 885-895 protein denotes NF-kappa B
T20 931-943 protein denotes position 234
T21 982-986 protein denotes CD40
T22 1004-1036 protein denotes TNF receptor-associated factor 2
T23 1038-1043 protein denotes TRAF2
T24 1046-1051 protein denotes TRAF3
T25 1057-1062 protein denotes TRAF5
T26 1085-1095 protein denotes NF-kappa B
T27 1130-1137 cell_type denotes B cells
T28 1139-1143 protein denotes CD40
T29 1152-1162 protein denotes NF-kappa B
T30 1201-1206 protein denotes TRAF2
T31 1211-1216 protein denotes TRAF5
T32 1230-1240 protein denotes NF-kappa B
T33 1275-1295 protein denotes transmembrane domain
T34 1299-1303 protein denotes CD40
T35 1342-1345 protein denotes p23
T36 1379-1383 protein denotes CD40
T37 1411-1429 protein denotes cytoplasmic domain
T38 1478-1493 protein denotes I kappa B alpha
T39 1499-1513 protein denotes I kappa B beta
T40 1549-1553 protein denotes CD40
T41 1576-1580 protein denotes CD40
T42 1590-1600 protein denotes NF-kappa B
T43 1707-1717 protein denotes NF-kappa B
T44 1760-1764 protein denotes CD40
T45 1813-1819 protein denotes ICAM-1
T46 1824-1829 protein denotes LFA-1
T47 1840-1850 protein denotes NF-kappa B
T48 1883-1887 protein denotes CD40
T49 1914-1918 protein denotes B7-1
T50 1920-1923 protein denotes Fas
T51 1929-1933 protein denotes CD23

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-110 Sentence denotes Characterization of CD40 signaling determinants regulating nuclear factor-kappa B activation in B lymphocytes.
S2 111-202 Sentence denotes CD40 signaling to B cells is important for generating an effective humoral immune response.
S3 203-396 Sentence denotes CD40 ligation leads to B cell activation events such as proliferation, Ig secretion, isotype switching, and up-regulation of cell surface molecules, as well as the generation of memory B cells.
S4 397-518 Sentence denotes Many of these events are dependent upon the ability of CD40 to activate the transcription factor NF-kappa B (NF-kappa B).
S5 519-743 Sentence denotes To define the CD40 signaling components upstream of NF-kappa B activation and the functional consequences downstream of NF-kappa B activation, we examined mouse B cell transfectants expressing wild-type or mutant human CD40.
S6 744-907 Sentence denotes Analysis of CD40 cytoplasmic domain truncation and point mutants defined a 10-amino acid CD40 cytoplasmic signaling determinant required for NF-kappa B activation.
S7 908-1107 Sentence denotes A threonine residue at position 234, previously shown to be important for CD40 association with TNF receptor-associated factor 2 (TRAF2), TRAF3, and TRAF5, was not required for NF-kappa B activation.
S8 1108-1229 Sentence denotes This suggests that in B cells, CD40-induced NF-kappa B activation can occur independently of TRAF2 and TRAF5 association.
S9 1230-1430 Sentence denotes NF-kappa B activation was independent of the transmembrane domain of CD40, suggesting that it is independent of p23, a molecule that associates with CD40 in a region other than the cytoplasmic domain.
S10 1431-1623 Sentence denotes Proteasome-dependent inhibitory kappa B alpha (I kappa B alpha) and I kappa B beta degradation occurred downstream of CD40 ligation and preceded CD40-mediated NF-kappa B nuclear translocation.
S11 1624-1706 Sentence denotes CD40- or pervanadate-mediated I kappa B tyrosine phosphorylation was not detected.
S12 1707-1830 Sentence denotes NF-kappa B activation correlated with the ability of CD40 to induce Ab secretion and the up-regulation of ICAM-1 and LFA-1.
S13 1831-1934 Sentence denotes However, NF-kappa B activation was insufficient for CD40-mediated up-regulation of B7-1, Fas, and CD23.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 96-109 NP denotes B lymphocytes
C2 129-136 NP denotes B cells
C3 203-216 NP denotes CD40 ligation
C4 226-395 NP denotes B cell activation events such as proliferation, Ig secretion, isotype switching, and up-regulation of cell surface molecules, as well as the generation of memory B cells
C5 405-417 NP denotes these events
C6 452-456 NP denotes CD40
C7 571-592 NP denotes NF-kappa B activation
C8 639-660 NP denotes NF-kappa B activation
C9 885-906 NP denotes NF-kappa B activation
C10 1085-1106 NP denotes NF-kappa B activation
C11 1130-1137 NP denotes B cells
C12 1230-1251 NP denotes NF-kappa B activation
C13 1299-1303 NP denotes CD40
C14 1321-1323 NP denotes it
C15 1347-1357 NP denotes a molecule
C16 1358-1362 NP denotes that
C17 1379-1383 NP denotes CD40
C18 1549-1562 NP denotes CD40 ligation
C19 1707-1728 NP denotes NF-kappa B activation
C20 1760-1764 NP denotes CD40
C21 1840-1861 NP denotes NF-kappa B activation
R1 C2 C1 coref-ident B cells,B lymphocytes
R2 C5 C4 coref-ident these events,"B cell activation events such as proliferation, Ig secretion, isotype switching, and up-regulation of cell surface molecules, as well as the generation of memory B cells"
R3 C8 C7 coref-ident NF-kappa B activation,NF-kappa B activation
R4 C9 C8 coref-ident NF-kappa B activation,NF-kappa B activation
R5 C10 C9 coref-ident NF-kappa B activation,NF-kappa B activation
R6 C11 C2 coref-ident B cells,B cells
R7 C12 C10 coref-ident NF-kappa B activation,NF-kappa B activation
R8 C13 C6 coref-ident CD40,CD40
R9 C14 C12 coref-pron it,NF-kappa B activation
R10 C16 C15 coref-relat that,a molecule
R11 C17 C13 coref-ident CD40,CD40
R12 C18 C3 coref-ident CD40 ligation,CD40 ligation
R13 C19 C12 coref-ident NF-kappa B activation,NF-kappa B activation
R14 C20 C17 coref-ident CD40,CD40
R15 C21 C19 coref-ident NF-kappa B activation,NF-kappa B activation

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 20-24 protein_molecule denotes CD40
T2 59-81 protein_complex denotes nuclear factor-kappa B
T3 96-109 cell_type denotes B lymphocytes
T4 111-115 protein_molecule denotes CD40
T5 129-136 cell_type denotes B cells
T6 178-201 other_name denotes humoral immune response
T7 203-207 protein_molecule denotes CD40
T8 226-250 other_name denotes B cell activation events
T9 259-272 other_name denotes proliferation
T10 274-286 other_name denotes Ig secretion
T11 288-305 other_name denotes isotype switching
T12 311-324 other_name denotes up-regulation
T13 328-350 protein_family_or_group denotes cell surface molecules
T14 381-395 cell_type denotes memory B cells
T15 452-456 protein_molecule denotes CD40
T16 494-504 protein_complex denotes NF-kappa B
T17 506-516 protein_complex denotes NF-kappa B
T18 533-537 protein_molecule denotes CD40
T19 571-581 protein_complex denotes NF-kappa B
T20 639-649 protein_complex denotes NF-kappa B
T21 674-700 cell_line denotes mouse B cell transfectants
T22 756-760 protein_molecule denotes CD40
T23 819-832 protein_domain_or_region denotes 10-amino acid
T24 833-837 protein_molecule denotes CD40
T25 885-895 protein_complex denotes NF-kappa B
T26 910-927 amino_acid_monomer denotes threonine residue
T27 931-943 protein_domain_or_region denotes position 234
T28 982-986 protein_molecule denotes CD40
T29 1004-1036 protein_molecule denotes TNF receptor-associated factor 2
T30 1038-1043 protein_molecule denotes TRAF2
T31 1046-1051 protein_molecule denotes TRAF3
T32 1057-1062 protein_molecule denotes TRAF5
T33 1085-1095 protein_complex denotes NF-kappa B
T34 1130-1137 cell_type denotes B cells
T35 1139-1143 protein_molecule denotes CD40
T36 1152-1162 protein_complex denotes NF-kappa B
T37 1201-1206 protein_molecule denotes TRAF2
T38 1211-1216 protein_molecule denotes TRAF5
T39 1230-1240 protein_complex denotes NF-kappa B
T40 1275-1295 protein_domain_or_region denotes transmembrane domain
T41 1299-1303 protein_molecule denotes CD40
T42 1342-1345 protein_molecule denotes p23
T43 1379-1383 protein_molecule denotes CD40
T44 1411-1429 protein_domain_or_region denotes cytoplasmic domain
T45 1478-1493 protein_molecule denotes I kappa B alpha
T46 1499-1513 protein_molecule denotes I kappa B beta
T47 1549-1553 protein_molecule denotes CD40
T48 1576-1580 protein_molecule denotes CD40
T49 1590-1600 protein_complex denotes NF-kappa B
T50 1707-1717 protein_complex denotes NF-kappa B
T51 1760-1764 protein_molecule denotes CD40
T52 1775-1787 other_name denotes Ab secretion
T53 1813-1819 protein_molecule denotes ICAM-1
T54 1824-1829 protein_molecule denotes LFA-1
T55 1840-1850 protein_complex denotes NF-kappa B
T56 1883-1887 protein_molecule denotes CD40
T57 1914-1918 protein_molecule denotes B7-1
T58 1920-1923 protein_molecule denotes Fas
T59 1929-1933 protein_molecule denotes CD23