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PubMed:9353251 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-4 protein denotes CD30
T2 30-35 protein denotes TRAF2
T3 77-81 protein denotes TRAF
T4 126-130 protein denotes CD30
T5 136-157 protein denotes cell-surface receptor
T6 244-264 protein denotes transcription factor
T7 265-274 protein denotes NF-kappaB
T8 276-280 protein denotes CD30
T9 360-371 cell_type denotes lymphocytes
T10 413-417 protein denotes CD30
T11 495-532 protein denotes type 1 tumor necrosis factor receptor
T12 534-539 protein denotes TNFR1
T13 581-599 protein denotes TRAF-binding sites
T14 611-615 protein denotes CD30
T15 616-634 protein denotes cytoplasmic domain
T16 685-690 protein denotes TRAF2
T17 694-722 protein denotes signal transduction molecule
T18 748-753 protein denotes TNFR1
T19 802-809 protein denotes kinases
T20 814-835 protein denotes transcription factors
T21 844-848 protein denotes CD30
T22 895-900 protein denotes TRAF2
T23 908-926 protein denotes cytoplasmic domain
T24 930-934 protein denotes CD30
T25 969-974 protein denotes TRAF2
T26 1002-1007 protein denotes TRAF1
T27 1060-1064 protein denotes CD30
T28 1159-1164 protein denotes TRAF2
T29 1193-1198 protein denotes TRAF2
T30 1207-1228 protein denotes coassociated proteins
T31 1317-1341 protein denotes death-inducing receptors
T32 1350-1355 protein denotes TNFR1
T33 1406-1428 protein denotes dominant-negative form
T34 1432-1437 protein denotes TRAF2
T35 1462-1467 protein denotes TNFR1
T36 1542-1546 protein denotes CD30
T37 1565-1585 protein denotes TRAF-binding members
T38 1593-1609 protein denotes TNFR superfamily

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-125 Sentence denotes CD30-dependent degradation of TRAF2: implications for negative regulation of TRAF signaling and the control of cell survival.
S2 126-275 Sentence denotes CD30 is a cell-surface receptor that can augment lymphocyte activation and survival through its ability to induce the transcription factor NF-kappaB.
S3 276-372 Sentence denotes CD30, however, has also been implicated in the induction of apoptotic cell death of lymphocytes.
S4 373-541 Sentence denotes Here we show that one of the effects of CD30 signal transduction is to render cells sensitive to apoptosis induced by the type 1 tumor necrosis factor receptor (TNFR1).
S5 542-635 Sentence denotes This sensitization is dependent on the TRAF-binding sites within the CD30 cytoplasmic domain.
S6 636-836 Sentence denotes One of the proteins that binds to these sites is TRAF2, a signal transduction molecule that is also utilized by TNFR1 to mediate the activation of several downstream kinases and transcription factors.
S7 837-1023 Sentence denotes During CD30 signal transduction, we found that binding of TRAF2 to the cytoplasmic domain of CD30 results in the rapid depletion of TRAF2 and the associated protein TRAF1 by proteolysis.
S8 1024-1165 Sentence denotes These data suggest a model in which CD30 limits its own ability to transduce cell survival signals through signal-coupled depletion of TRAF2.
S9 1166-1356 Sentence denotes Depletion of intracellular TRAF2 and its coassociated proteins also increased the sensitivity of the cell to undergoing apoptosis during activation of death-inducing receptors such as TNFR1.
S10 1357-1483 Sentence denotes Consistent with this hypothesis, expression of a dominant-negative form of TRAF2 was found to potentiate TNFR1-mediated death.
S11 1484-1649 Sentence denotes These studies provide a potential mechanism through which CD30, as well as other TRAF-binding members of the TNFR superfamily, can negatively regulate cell survival.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 30-35 NP denotes TRAF2
C2 111-124 NP denotes cell survival
C3 126-130 NP denotes CD30
C4 134-157 NP denotes a cell-surface receptor
C5 158-162 NP denotes that
C6 218-221 NP denotes its
C7 276-280 NP denotes CD30
C9 413-437 NP denotes CD30 signal transduction
C8 391-437 NP denotes one of the effects of CD30 signal transduction
C10 491-540 NP denotes the type 1 tumor necrosis factor receptor (TNFR1)
C11 542-560 NP denotes This sensitization
C13 607-634 NP denotes the CD30 cytoplasmic domain
C12 577-634 NP denotes the TRAF-binding sites within the CD30 cytoplasmic domain
C14 643-655 NP denotes the proteins
C15 656-660 NP denotes that
C16 670-681 NP denotes these sites
C17 685-690 NP denotes TRAF2
C19 692-722 NP denotes a signal transduction molecule
C20 723-727 NP denotes that
C21 748-753 NP denotes TNFR1
C18 692-835 NP denotes a signal transduction molecule that is also utilized by TNFR1 to mediate the activation of several downstream kinases and transcription factors
C22 844-868 NP denotes CD30 signal transduction
C23 895-900 NP denotes TRAF2
C25 930-934 NP denotes CD30
C24 904-934 NP denotes the cytoplasmic domain of CD30
C26 969-974 NP denotes TRAF2
C27 979-1007 NP denotes the associated protein TRAF1
C28 1043-1050 NP denotes a model
C29 1054-1059 NP denotes which
C30 1060-1064 NP denotes CD30
C31 1072-1075 NP denotes its
C32 1159-1164 NP denotes TRAF2
C33 1179-1198 NP denotes intracellular TRAF2
C34 1203-1206 NP denotes its
C35 1350-1355 NP denotes TNFR1
C36 1432-1437 NP denotes TRAF2
C37 1506-1527 NP denotes a potential mechanism
C38 1536-1541 NP denotes which
C39 1542-1546 NP denotes CD30
C40 1635-1648 NP denotes cell survival
R1 C5 C4 coref-relat that,a cell-surface receptor
R2 C6 C4 coref-pron its,a cell-surface receptor
R3 C7 C3 coref-ident CD30,CD30
R4 C11 C8 coref-ident This sensitization,one of the effects of CD30 signal transduction
R5 C15 C14 coref-relat that,the proteins
R6 C16 C12 coref-ident these sites,the TRAF-binding sites within the CD30 cytoplasmic domain
R7 C17 C1 coref-ident TRAF2,TRAF2
R8 C20 C19 coref-relat that,a signal transduction molecule
R9 C21 C10 coref-ident TNFR1,the type 1 tumor necrosis factor receptor (TNFR1)
R10 C18 C17 coref-appos a signal transduction molecule that is also utilized by TNFR1 to mediate the activation of several downstream kinases and transcription factors,TRAF2
R11 C22 C9 coref-ident CD30 signal transduction,CD30 signal transduction
R12 C23 C17 coref-ident TRAF2,TRAF2
R13 C25 C7 coref-ident CD30,CD30
R14 C24 C13 coref-ident the cytoplasmic domain of CD30,the CD30 cytoplasmic domain
R15 C26 C23 coref-ident TRAF2,TRAF2
R16 C27 C21 coref-ident the associated protein TRAF1,TNFR1
R17 C29 C28 coref-relat which,a model
R18 C30 C25 coref-ident CD30,CD30
R19 C31 C30 coref-pron its,CD30
R20 C32 C26 coref-ident TRAF2,TRAF2
R21 C34 C33 coref-pron its,intracellular TRAF2
R22 C35 C27 coref-ident TNFR1,the associated protein TRAF1
R23 C36 C32 coref-ident TRAF2,TRAF2
R24 C38 C37 coref-relat which,a potential mechanism
R25 C39 C30 coref-ident CD30,CD30
R26 C40 C2 coref-ident cell survival,cell survival

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-4 protein_molecule denotes CD30
T2 30-35 protein_molecule denotes TRAF2
T3 54-73 other_name denotes negative regulation
T4 77-81 protein_family_or_group denotes TRAF
T5 126-130 protein_molecule denotes CD30
T6 136-157 protein_family_or_group denotes cell-surface receptor
T7 175-196 other_name denotes lymphocyte activation
T8 244-264 protein_family_or_group denotes transcription factor
T9 265-274 protein_complex denotes NF-kappaB
T10 276-280 protein_molecule denotes CD30
T11 336-356 other_name denotes apoptotic cell death
T12 360-371 cell_type denotes lymphocytes
T13 413-417 protein_molecule denotes CD30
T14 470-479 other_name denotes apoptosis
T15 495-532 protein_molecule denotes type 1 tumor necrosis factor receptor
T16 534-539 protein_molecule denotes TNFR1
T17 581-599 protein_domain_or_region denotes TRAF-binding sites
T18 611-615 protein_molecule denotes CD30
T19 616-634 protein_domain_or_region denotes cytoplasmic domain
T20 685-690 protein_molecule denotes TRAF2
T21 694-722 protein_family_or_group denotes signal transduction molecule
T22 748-753 protein_molecule denotes TNFR1
T23 802-809 protein_family_or_group denotes kinases
T24 814-835 protein_family_or_group denotes transcription factors
T25 844-848 protein_molecule denotes CD30
T26 895-900 protein_molecule denotes TRAF2
T27 908-926 protein_domain_or_region denotes cytoplasmic domain
T28 930-934 protein_molecule denotes CD30
T29 969-974 protein_molecule denotes TRAF2
T30 1002-1007 protein_molecule denotes TRAF1
T31 1060-1064 protein_molecule denotes CD30
T32 1131-1155 other_name denotes signal-coupled depletion
T33 1159-1164 protein_molecule denotes TRAF2
T34 1193-1198 protein_molecule denotes TRAF2
T35 1207-1228 protein_family_or_group denotes coassociated proteins
T36 1286-1295 other_name denotes apoptosis
T37 1317-1341 protein_family_or_group denotes death-inducing receptors
T38 1350-1355 protein_molecule denotes TNFR1
T39 1406-1428 protein_family_or_group denotes dominant-negative form
T40 1432-1437 protein_molecule denotes TRAF2
T41 1462-1467 protein_molecule denotes TNFR1
T42 1542-1546 protein_molecule denotes CD30
T43 1565-1585 protein_family_or_group denotes TRAF-binding members
T44 1593-1609 protein_family_or_group denotes TNFR superfamily