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Inflammaging

Id Subject Object Predicate Lexical cue
T1 0-131 Sentence denotes Molecular characterization and pattern of tissue expression of the gene for neutrophil gelatinase-associated lipocalin from humans.
T2 132-286 Sentence denotes Neutrophil gelatinase-associated lipocalin (NGAL) is a 25-kDa lipocalin first identified as a protein stored in specific granules of the human neutrophil.
T3 287-468 Sentence denotes The protein is believed to bind small lipophilic substances such as bacterial derived formylpeptides and lipopolysaccharides (LPS) and might function as a modulator of inflammation.
T4 469-699 Sentence denotes To characterize the regulation of NGAL further, we have cloned and sequenced a 5869-bp region of the NGAL gene including 1695 bp of the 5' nontranscribed region and a 3696-bp coding region encompassing seven exons and six introns.
T5 700-777 Sentence denotes The transcriptional start sites were identified by an RNase protection assay.
T6 778-836 Sentence denotes The NGAL gene is highly homologous to the mouse gene 24p3.
T7 837-931 Sentence denotes NGAL was expressed in bone marrow and in tissues that are prone to exposure to microorganisms.
T8 932-1175 Sentence denotes Potential cis-acting elements were identified in the promoter region of the NGAL gene by computer analysis and include binding sites for CTF/CBP, the hematopoietic transcription factors GATA-1 and PU.1, and the LPS-inducible factor NF-kappa B.
T1 0-131 Sentence denotes Molecular characterization and pattern of tissue expression of the gene for neutrophil gelatinase-associated lipocalin from humans.
T2 132-286 Sentence denotes Neutrophil gelatinase-associated lipocalin (NGAL) is a 25-kDa lipocalin first identified as a protein stored in specific granules of the human neutrophil.
T3 287-468 Sentence denotes The protein is believed to bind small lipophilic substances such as bacterial derived formylpeptides and lipopolysaccharides (LPS) and might function as a modulator of inflammation.
T4 469-699 Sentence denotes To characterize the regulation of NGAL further, we have cloned and sequenced a 5869-bp region of the NGAL gene including 1695 bp of the 5' nontranscribed region and a 3696-bp coding region encompassing seven exons and six introns.
T5 700-777 Sentence denotes The transcriptional start sites were identified by an RNase protection assay.
T6 778-836 Sentence denotes The NGAL gene is highly homologous to the mouse gene 24p3.
T7 837-931 Sentence denotes NGAL was expressed in bone marrow and in tissues that are prone to exposure to microorganisms.
T8 932-1175 Sentence denotes Potential cis-acting elements were identified in the promoter region of the NGAL gene by computer analysis and include binding sites for CTF/CBP, the hematopoietic transcription factors GATA-1 and PU.1, and the LPS-inducible factor NF-kappa B.

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 76-118 protein denotes neutrophil gelatinase-associated lipocalin
T2 132-174 protein denotes Neutrophil gelatinase-associated lipocalin
T3 176-180 protein denotes NGAL
T4 187-203 protein denotes 25-kDa lipocalin
T5 269-285 cell_type denotes human neutrophil
T6 503-507 protein denotes NGAL
T7 548-562 DNA denotes 5869-bp region
T8 570-579 DNA denotes NGAL gene
T9 605-629 DNA denotes 5' nontranscribed region
T10 636-657 DNA denotes 3696-bp coding region
T11 671-698 DNA denotes seven exons and six introns
T12 704-731 DNA denotes transcriptional start sites
T13 754-759 protein denotes RNase
T14 782-786 protein denotes NGAL
T15 820-835 DNA denotes mouse gene 24p3
T16 837-841 protein denotes NGAL
T17 942-961 DNA denotes cis-acting elements
T18 985-1000 DNA denotes promoter region
T19 1008-1017 DNA denotes NGAL gene
T20 1051-1064 DNA denotes binding sites
T21 1069-1076 protein denotes CTF/CBP
T22 1082-1117 protein denotes hematopoietic transcription factors
T23 1118-1124 protein denotes GATA-1
T24 1129-1133 protein denotes PU.1
T25 1143-1174 protein denotes LPS-inducible factor NF-kappa B

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-131 Sentence denotes Molecular characterization and pattern of tissue expression of the gene for neutrophil gelatinase-associated lipocalin from humans.
S2 132-286 Sentence denotes Neutrophil gelatinase-associated lipocalin (NGAL) is a 25-kDa lipocalin first identified as a protein stored in specific granules of the human neutrophil.
S3 287-468 Sentence denotes The protein is believed to bind small lipophilic substances such as bacterial derived formylpeptides and lipopolysaccharides (LPS) and might function as a modulator of inflammation.
S4 469-699 Sentence denotes To characterize the regulation of NGAL further, we have cloned and sequenced a 5869-bp region of the NGAL gene including 1695 bp of the 5' nontranscribed region and a 3696-bp coding region encompassing seven exons and six introns.
S5 700-777 Sentence denotes The transcriptional start sites were identified by an RNase protection assay.
S6 778-836 Sentence denotes The NGAL gene is highly homologous to the mouse gene 24p3.
S7 837-931 Sentence denotes NGAL was expressed in bone marrow and in tissues that are prone to exposure to microorganisms.
S8 932-1175 Sentence denotes Potential cis-acting elements were identified in the promoter region of the NGAL gene by computer analysis and include binding sites for CTF/CBP, the hematopoietic transcription factors GATA-1 and PU.1, and the LPS-inducible factor NF-kappa B.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 132-181 NP denotes Neutrophil gelatinase-associated lipocalin (NGAL)
C2 287-298 NP denotes The protein
C3 503-507 NP denotes NGAL
C4 566-579 NP denotes the NGAL gene
C5 778-791 NP denotes The NGAL gene
C6 837-841 NP denotes NGAL
C7 878-885 NP denotes tissues
C8 886-890 NP denotes that
C9 1004-1017 NP denotes the NGAL gene
R1 C2 C1 coref-ident The protein,Neutrophil gelatinase-associated lipocalin (NGAL)
R2 C3 C2 coref-ident NGAL,The protein
R3 C5 C4 coref-ident The NGAL gene,the NGAL gene
R4 C6 C3 coref-ident NGAL,NGAL
R5 C8 C7 coref-relat that,tissues
R6 C9 C5 coref-ident the NGAL gene,The NGAL gene

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-26 other_name denotes Molecular characterization
T2 42-59 other_name denotes tissue expression
T3 76-118 protein_molecule denotes neutrophil gelatinase-associated lipocalin
T4 124-130 multi_cell denotes humans
T5 132-174 protein_molecule denotes Neutrophil gelatinase-associated lipocalin
T6 176-180 protein_molecule denotes NGAL
T7 187-203 protein_molecule denotes 25-kDa lipocalin
T8 253-261 cell_component denotes granules
T9 269-285 cell_type denotes human neutrophil
T10 319-346 other_organic_compound denotes small lipophilic substances
T11 355-387 peptide denotes bacterial derived formylpeptides
T12 392-411 lipid denotes lipopolysaccharides
T13 413-416 lipid denotes LPS
T14 455-467 other_name denotes inflammation
T15 503-507 protein_molecule denotes NGAL
T16 548-562 DNA_domain_or_region denotes 5869-bp region
T17 570-574 protein_molecule denotes NGAL
T18 605-629 DNA_domain_or_region denotes 5' nontranscribed region
T19 636-657 DNA_domain_or_region denotes 3696-bp coding region
T20 671-698 DNA_domain_or_region denotes seven exons and six introns
T21 704-731 DNA_family_or_group denotes transcriptional start sites
T22 754-759 protein_molecule denotes RNase
T23 782-786 protein_molecule denotes NGAL
T24 820-835 DNA_domain_or_region denotes mouse gene 24p3
T25 837-841 protein_molecule denotes NGAL
T26 859-870 tissue denotes bone marrow
T27 878-885 tissue denotes tissues
T28 916-930 mono_cell denotes microorganisms
T29 942-961 DNA_family_or_group denotes cis-acting elements
T30 985-1000 DNA_domain_or_region denotes promoter region
T31 1008-1012 protein_molecule denotes NGAL
T32 1051-1064 DNA_domain_or_region denotes binding sites
T33 1069-1076 protein_molecule denotes CTF/CBP
T34 1082-1117 protein_family_or_group denotes hematopoietic transcription factors
T35 1118-1124 protein_molecule denotes GATA-1
T36 1129-1133 protein_molecule denotes PU.1
T37 1143-1146 lipid denotes LPS
T38 1164-1174 protein_complex denotes NF-kappa B