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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 30-34 protein denotes CD21
T2 57-71 DNA denotes viral promoter
T3 76-85 protein denotes NF-kappaB
T4 176-202 cell_type denotes normal human B lymphocytes
T5 207-211 protein denotes CD21
T6 217-240 protein denotes CR2 complement receptor
T7 308-326 cell_type denotes noncycling B cells
T8 404-408 protein denotes CD21
T9 421-442 cell_type denotes resting human B cells
T10 465-474 protein denotes NF-kappaB
T11 475-495 protein denotes transcription factor
T12 581-607 DNA denotes viral latent gene promoter
T13 683-692 protein denotes NF-kappaB

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-96 Sentence denotes Epstein-Barr virus binding to CD21 activates the initial viral promoter via NF-kappaB induction.
S2 97-241 Sentence denotes Epstein-Barr virus (EBV), an oncogenic human herpesvirus, binds to and infects normal human B lymphocytes via CD21, the CR2 complement receptor.
S3 242-608 Sentence denotes Studies of the mechanisms that enable EBV to infect nonactivated, noncycling B cells provide compelling evidence for a sequence of events in which EBV binding to CD21 on purified resting human B cells rapidly activates the NF-kappaB transcription factor, which, in turn, binds to and mediates transcriptional activation of Wp, the initial viral latent gene promoter.
S4 609-767 Sentence denotes Thus, EBV binding to its cellular receptor on resting B cells triggers an NF-kappaB-dependent intracellular signaling pathway which is required for infection.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 30-34 NP denotes CD21
C2 97-121 NP denotes Epstein-Barr virus (EBV)
C3 123-153 NP denotes an oncogenic human herpesvirus
C4 207-211 NP denotes CD21
C5 213-240 NP denotes the CR2 complement receptor
C6 253-267 NP denotes the mechanisms
C7 268-272 NP denotes that
C8 280-283 NP denotes EBV
C9 359-379 NP denotes a sequence of events
C10 383-388 NP denotes which
C11 404-408 NP denotes CD21
C12 461-495 NP denotes the NF-kappaB transcription factor
C13 497-502 NP denotes which
C14 565-567 NP denotes Wp
C15 569-607 NP denotes the initial viral latent gene promoter
C16 615-618 NP denotes EBV
C17 630-633 NP denotes its
C18 680-734 NP denotes an NF-kappaB-dependent intracellular signaling pathway
C19 735-740 NP denotes which
R1 C3 C2 coref-appos an oncogenic human herpesvirus,Epstein-Barr virus (EBV)
R2 C4 C1 coref-ident CD21,CD21
R3 C5 C4 coref-appos the CR2 complement receptor,CD21
R4 C7 C6 coref-relat that,the mechanisms
R5 C8 C2 coref-ident EBV,Epstein-Barr virus (EBV)
R6 C10 C9 coref-relat which,a sequence of events
R7 C11 C4 coref-ident CD21,CD21
R8 C13 C12 coref-relat which,the NF-kappaB transcription factor
R9 C15 C14 coref-appos the initial viral latent gene promoter,Wp
R10 C16 C8 coref-ident EBV,EBV
R11 C17 C16 coref-pron its,EBV
R12 C19 C18 coref-relat which,an NF-kappaB-dependent intracellular signaling pathway

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-18 virus denotes Epstein-Barr virus
T2 30-34 protein_molecule denotes CD21
T3 57-71 DNA_domain_or_region denotes viral promoter
T4 76-85 protein_complex denotes NF-kappaB
T5 97-115 virus denotes Epstein-Barr virus
T6 117-120 virus denotes EBV
T7 126-153 virus denotes oncogenic human herpesvirus
T8 176-202 cell_type denotes normal human B lymphocytes
T9 207-211 protein_molecule denotes CD21
T10 217-240 protein_molecule denotes CR2 complement receptor
T11 280-283 virus denotes EBV
T12 308-326 cell_type denotes noncycling B cells
T13 389-392 virus denotes EBV
T14 404-408 protein_molecule denotes CD21
T15 421-442 cell_type denotes resting human B cells
T16 465-474 protein_complex denotes NF-kappaB
T17 475-495 protein_family_or_group denotes transcription factor
T18 581-607 DNA_domain_or_region denotes viral latent gene promoter
T19 615-618 virus denotes EBV
T20 683-692 protein_complex denotes NF-kappaB