PubMed:9139869
Annnotations
{"target":"https://pubannotation.org/docs/sourcedb/PubMed/sourceid/9139869","sourcedb":"PubMed","sourceid":"9139869","source_url":"http://www.ncbi.nlm.nih.gov/pubmed/9139869","text":"A one-step DGGE scanning method for detection of mutations in the K-, N-, and H-ras oncogenes: mutations at codons 12, 13 and 61 are rare in B-cell non-Hodgkin's lymphoma.\nMutations in the N-, K-, and H-ras genes are key events in the process of carcinogenesis of many human cancers and may serve as important targets for therapeutic intervention. We developed a simple diagnostic method that in one step and within 5 hr determines the mutational status of any of the 3 ras genes in a given tumor sample. The method combines polymerase chain reaction (PCR) with denaturing gradient gel electrophoresis (DGGE) and allows simultaneous mutation scanning of 6 regions covering \"hot-spot\" codons 12, 13 and 61 of the 3 ras genes. The sensitivity of the assay was demonstrated by the analysis of control mutations, either naturally occurring or created by site-directed mutagenesis. We further demonstrate that unambiguous identification of ras mutations can be achieved by heteroduplex analysis in denaturing gradient gels, circumventing sequence analysis. We applied the method to establish the mutational status of all 3 ras genes in 123 samples of B-cell non-Hodgkin's lymphoma. Altogether, one diffuse large B-cell lymphoma and one B-cell chronic lymphocytic leukemia (B-CLL) harbored a mutation (G12S and G12A, respectively) in the K-ras gene, and one B-CLL harbored a mutation (Q61R) in the N-ras gene. We therefore conclude that ras mutations only contribute rarely, if at all, to carcinogenesis in B-cell non-Hodgkin's lymphoma.","tracks":[{"project":"PennBioIE","denotations":[{"id":"T1","span":{"begin":66,"end":68},"obj":"protein"},{"id":"T2","span":{"begin":70,"end":72},"obj":"protein"},{"id":"T3","span":{"begin":78,"end":80},"obj":"protein"},{"id":"T4","span":{"begin":80,"end":83},"obj":"protein"},{"id":"T5","span":{"begin":95,"end":104},"obj":"protein"},{"id":"T6","span":{"begin":108,"end":114},"obj":"protein"},{"id":"T7","span":{"begin":119,"end":121},"obj":"protein"},{"id":"T8","span":{"begin":126,"end":128},"obj":"protein"},{"id":"T9","span":{"begin":189,"end":191},"obj":"protein"},{"id":"T10","span":{"begin":193,"end":195},"obj":"protein"},{"id":"T11","span":{"begin":201,"end":203},"obj":"protein"},{"id":"T12","span":{"begin":203,"end":206},"obj":"protein"},{"id":"T13","span":{"begin":470,"end":473},"obj":"protein"},{"id":"T14","span":{"begin":525,"end":535},"obj":"protein"},{"id":"T15","span":{"begin":684,"end":690},"obj":"protein"},{"id":"T16","span":{"begin":695,"end":697},"obj":"protein"},{"id":"T17","span":{"begin":702,"end":704},"obj":"protein"},{"id":"T18","span":{"begin":714,"end":717},"obj":"protein"},{"id":"T19","span":{"begin":935,"end":938},"obj":"protein"},{"id":"T20","span":{"begin":1118,"end":1121},"obj":"protein"},{"id":"T21","span":{"begin":1286,"end":1294},"obj":"protein"},{"id":"T22","span":{"begin":1296,"end":1297},"obj":"protein"},{"id":"T23","span":{"begin":1297,"end":1299},"obj":"protein"},{"id":"T24","span":{"begin":1299,"end":1300},"obj":"protein"},{"id":"T25","span":{"begin":1305,"end":1306},"obj":"protein"},{"id":"T26","span":{"begin":1306,"end":1308},"obj":"protein"},{"id":"T27","span":{"begin":1308,"end":1309},"obj":"protein"},{"id":"T28","span":{"begin":1332,"end":1337},"obj":"protein"},{"id":"T29","span":{"begin":1369,"end":1377},"obj":"protein"},{"id":"T30","span":{"begin":1379,"end":1380},"obj":"protein"},{"id":"T31","span":{"begin":1380,"end":1382},"obj":"protein"},{"id":"T32","span":{"begin":1382,"end":1383},"obj":"protein"},{"id":"T33","span":{"begin":1392,"end":1397},"obj":"protein"},{"id":"T34","span":{"begin":1431,"end":1434},"obj":"protein"}],"attributes":[{"subj":"T1","pred":"source","obj":"PennBioIE"},{"subj":"T2","pred":"source","obj":"PennBioIE"},{"subj":"T3","pred":"source","obj":"PennBioIE"},{"subj":"T4","pred":"source","obj":"PennBioIE"},{"subj":"T5","pred":"source","obj":"PennBioIE"},{"subj":"T6","pred":"source","obj":"PennBioIE"},{"subj":"T7","pred":"source","obj":"PennBioIE"},{"subj":"T8","pred":"source","obj":"PennBioIE"},{"subj":"T9","pred":"source","obj":"PennBioIE"},{"subj":"T10","pred":"source","obj":"PennBioIE"},{"subj":"T11","pred":"source","obj":"PennBioIE"},{"subj":"T12","pred":"source","obj":"PennBioIE"},{"subj":"T13","pred":"source","obj":"PennBioIE"},{"subj":"T14","pred":"source","obj":"PennBioIE"},{"subj":"T15","pred":"source","obj":"PennBioIE"},{"subj":"T16","pred":"source","obj":"PennBioIE"},{"subj":"T17","pred":"source","obj":"PennBioIE"},{"subj":"T18","pred":"source","obj":"PennBioIE"},{"subj":"T19","pred":"source","obj":"PennBioIE"},{"subj":"T20","pred":"source","obj":"PennBioIE"},{"subj":"T21","pred":"source","obj":"PennBioIE"},{"subj":"T22","pred":"source","obj":"PennBioIE"},{"subj":"T23","pred":"source","obj":"PennBioIE"},{"subj":"T24","pred":"source","obj":"PennBioIE"},{"subj":"T25","pred":"source","obj":"PennBioIE"},{"subj":"T26","pred":"source","obj":"PennBioIE"},{"subj":"T27","pred":"source","obj":"PennBioIE"},{"subj":"T28","pred":"source","obj":"PennBioIE"},{"subj":"T29","pred":"source","obj":"PennBioIE"},{"subj":"T30","pred":"source","obj":"PennBioIE"},{"subj":"T31","pred":"source","obj":"PennBioIE"},{"subj":"T32","pred":"source","obj":"PennBioIE"},{"subj":"T33","pred":"source","obj":"PennBioIE"},{"subj":"T34","pred":"source","obj":"PennBioIE"}]},{"project":"DisGeNET","denotations":[{"id":"T0","span":{"begin":1112,"end":1117},"obj":"gene:5079"},{"id":"T1","span":{"begin":1167,"end":1175},"obj":"disease:C0024299"},{"id":"T2","span":{"begin":1392,"end":1397},"obj":"gene:4893"},{"id":"T3","span":{"begin":1352,"end":1357},"obj":"disease:C0023434"},{"id":"T4","span":{"begin":1392,"end":1397},"obj":"gene:4893"},{"id":"T5","span":{"begin":1231,"end":1266},"obj":"disease:C0023434"},{"id":"T6","span":{"begin":1392,"end":1397},"obj":"gene:4893"},{"id":"T7","span":{"begin":1193,"end":1222},"obj":"disease:C0079744"}],"relations":[{"id":"R1","pred":"associated_with","subj":"T0","obj":"T1"},{"id":"R2","pred":"associated_with","subj":"T2","obj":"T3"},{"id":"R3","pred":"associated_with","subj":"T4","obj":"T5"},{"id":"R4","pred":"associated_with","subj":"T6","obj":"T7"}],"namespaces":[{"prefix":"gene","uri":"http://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"disease","uri":"http://purl.bioontology.org/ontology/MEDLINEPLUS/"}],"attributes":[{"subj":"T0","pred":"source","obj":"DisGeNET"},{"subj":"T1","pred":"source","obj":"DisGeNET"},{"subj":"T2","pred":"source","obj":"DisGeNET"},{"subj":"T3","pred":"source","obj":"DisGeNET"},{"subj":"T4","pred":"source","obj":"DisGeNET"},{"subj":"T5","pred":"source","obj":"DisGeNET"},{"subj":"T6","pred":"source","obj":"DisGeNET"},{"subj":"T7","pred":"source","obj":"DisGeNET"}]},{"project":"DisGeNET5_variant_disease","denotations":[{"id":"9139869-7#119#123#geners121913250","span":{"begin":1296,"end":1300},"obj":"geners121913250"},{"id":"9139869-7#128#132#geners121913237","span":{"begin":1305,"end":1309},"obj":"geners121913237"},{"id":"9139869-7#202#206#geners11554290","span":{"begin":1379,"end":1383},"obj":"geners11554290"},{"id":"9139869-7#16#45#diseaseC0079744","span":{"begin":1193,"end":1222},"obj":"diseaseC0079744"},{"id":"9139869-7#54#89#diseaseC0023434","span":{"begin":1231,"end":1266},"obj":"diseaseC0023434"},{"id":"9139869-7#91#96#diseaseC0023434","span":{"begin":1268,"end":1273},"obj":"diseaseC0023434"},{"id":"9139869-7#16#45#diseaseC0079744","span":{"begin":1193,"end":1222},"obj":"diseaseC0079744"},{"id":"9139869-7#54#89#diseaseC0023434","span":{"begin":1231,"end":1266},"obj":"diseaseC0023434"},{"id":"9139869-7#91#96#diseaseC0023434","span":{"begin":1268,"end":1273},"obj":"diseaseC0023434"},{"id":"9139869-7#175#180#diseaseC0023434","span":{"begin":1352,"end":1357},"obj":"diseaseC0023434"},{"id":"9139869-7#16#45#diseaseC0079744","span":{"begin":1193,"end":1222},"obj":"diseaseC0079744"},{"id":"9139869-7#54#89#diseaseC0023434","span":{"begin":1231,"end":1266},"obj":"diseaseC0023434"},{"id":"9139869-7#91#96#diseaseC0023434","span":{"begin":1268,"end":1273},"obj":"diseaseC0023434"},{"id":"9139869-7#175#180#diseaseC0023434","span":{"begin":1352,"end":1357},"obj":"diseaseC0023434"}],"relations":[{"id":"119#123#geners12191325016#45#diseaseC0079744","pred":"associated_with","subj":"9139869-7#119#123#geners121913250","obj":"9139869-7#16#45#diseaseC0079744"},{"id":"119#123#geners12191325054#89#diseaseC0023434","pred":"associated_with","subj":"9139869-7#119#123#geners121913250","obj":"9139869-7#54#89#diseaseC0023434"},{"id":"119#123#geners12191325091#96#diseaseC0023434","pred":"associated_with","subj":"9139869-7#119#123#geners121913250","obj":"9139869-7#91#96#diseaseC0023434"},{"id":"119#123#geners12191325016#45#diseaseC0079744","pred":"associated_with","subj":"9139869-7#119#123#geners121913250","obj":"9139869-7#16#45#diseaseC0079744"},{"id":"119#123#geners12191325054#89#diseaseC0023434","pred":"associated_with","subj":"9139869-7#119#123#geners121913250","obj":"9139869-7#54#89#diseaseC0023434"},{"id":"119#123#geners12191325091#96#diseaseC0023434","pred":"associated_with","subj":"9139869-7#119#123#geners121913250","obj":"9139869-7#91#96#diseaseC0023434"},{"id":"119#123#geners121913250175#180#diseaseC0023434","pred":"associated_with","subj":"9139869-7#119#123#geners121913250","obj":"9139869-7#175#180#diseaseC0023434"},{"id":"119#123#geners12191325016#45#diseaseC0079744","pred":"associated_with","subj":"9139869-7#119#123#geners121913250","obj":"9139869-7#16#45#diseaseC0079744"},{"id":"119#123#geners12191325054#89#diseaseC0023434","pred":"associated_with","subj":"9139869-7#119#123#geners121913250","obj":"9139869-7#54#89#diseaseC0023434"},{"id":"119#123#geners12191325091#96#diseaseC0023434","pred":"associated_with","subj":"9139869-7#119#123#geners121913250","obj":"9139869-7#91#96#diseaseC0023434"},{"id":"119#123#geners121913250175#180#diseaseC0023434","pred":"associated_with","subj":"9139869-7#119#123#geners121913250","obj":"9139869-7#175#180#diseaseC0023434"},{"id":"128#132#geners12191323716#45#diseaseC0079744","pred":"associated_with","subj":"9139869-7#128#132#geners121913237","obj":"9139869-7#16#45#diseaseC0079744"},{"id":"128#132#geners12191323754#89#diseaseC0023434","pred":"associated_with","subj":"9139869-7#128#132#geners121913237","obj":"9139869-7#54#89#diseaseC0023434"},{"id":"128#132#geners12191323791#96#diseaseC0023434","pred":"associated_with","subj":"9139869-7#128#132#geners121913237","obj":"9139869-7#91#96#diseaseC0023434"},{"id":"128#132#geners12191323716#45#diseaseC0079744","pred":"associated_with","subj":"9139869-7#128#132#geners121913237","obj":"9139869-7#16#45#diseaseC0079744"},{"id":"128#132#geners12191323754#89#diseaseC0023434","pred":"associated_with","subj":"9139869-7#128#132#geners121913237","obj":"9139869-7#54#89#diseaseC0023434"},{"id":"128#132#geners12191323791#96#diseaseC0023434","pred":"associated_with","subj":"9139869-7#128#132#geners121913237","obj":"9139869-7#91#96#diseaseC0023434"},{"id":"128#132#geners121913237175#180#diseaseC0023434","pred":"associated_with","subj":"9139869-7#128#132#geners121913237","obj":"9139869-7#175#180#diseaseC0023434"},{"id":"128#132#geners12191323716#45#diseaseC0079744","pred":"associated_with","subj":"9139869-7#128#132#geners121913237","obj":"9139869-7#16#45#diseaseC0079744"},{"id":"128#132#geners12191323754#89#diseaseC0023434","pred":"associated_with","subj":"9139869-7#128#132#geners121913237","obj":"9139869-7#54#89#diseaseC0023434"},{"id":"128#132#geners12191323791#96#diseaseC0023434","pred":"associated_with","subj":"9139869-7#128#132#geners121913237","obj":"9139869-7#91#96#diseaseC0023434"},{"id":"128#132#geners121913237175#180#diseaseC0023434","pred":"associated_with","subj":"9139869-7#128#132#geners121913237","obj":"9139869-7#175#180#diseaseC0023434"},{"id":"202#206#geners1155429016#45#diseaseC0079744","pred":"associated_with","subj":"9139869-7#202#206#geners11554290","obj":"9139869-7#16#45#diseaseC0079744"},{"id":"202#206#geners1155429054#89#diseaseC0023434","pred":"associated_with","subj":"9139869-7#202#206#geners11554290","obj":"9139869-7#54#89#diseaseC0023434"},{"id":"202#206#geners1155429091#96#diseaseC0023434","pred":"associated_with","subj":"9139869-7#202#206#geners11554290","obj":"9139869-7#91#96#diseaseC0023434"},{"id":"202#206#geners1155429016#45#diseaseC0079744","pred":"associated_with","subj":"9139869-7#202#206#geners11554290","obj":"9139869-7#16#45#diseaseC0079744"},{"id":"202#206#geners1155429054#89#diseaseC0023434","pred":"associated_with","subj":"9139869-7#202#206#geners11554290","obj":"9139869-7#54#89#diseaseC0023434"},{"id":"202#206#geners1155429091#96#diseaseC0023434","pred":"associated_with","subj":"9139869-7#202#206#geners11554290","obj":"9139869-7#91#96#diseaseC0023434"},{"id":"202#206#geners11554290175#180#diseaseC0023434","pred":"associated_with","subj":"9139869-7#202#206#geners11554290","obj":"9139869-7#175#180#diseaseC0023434"},{"id":"202#206#geners1155429016#45#diseaseC0079744","pred":"associated_with","subj":"9139869-7#202#206#geners11554290","obj":"9139869-7#16#45#diseaseC0079744"},{"id":"202#206#geners1155429054#89#diseaseC0023434","pred":"associated_with","subj":"9139869-7#202#206#geners11554290","obj":"9139869-7#54#89#diseaseC0023434"},{"id":"202#206#geners1155429091#96#diseaseC0023434","pred":"associated_with","subj":"9139869-7#202#206#geners11554290","obj":"9139869-7#91#96#diseaseC0023434"},{"id":"202#206#geners11554290175#180#diseaseC0023434","pred":"associated_with","subj":"9139869-7#202#206#geners11554290","obj":"9139869-7#175#180#diseaseC0023434"}],"attributes":[{"subj":"9139869-7#119#123#geners121913250","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#128#132#geners121913237","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#202#206#geners11554290","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#16#45#diseaseC0079744","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#54#89#diseaseC0023434","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#91#96#diseaseC0023434","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#16#45#diseaseC0079744","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#54#89#diseaseC0023434","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#91#96#diseaseC0023434","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#175#180#diseaseC0023434","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#16#45#diseaseC0079744","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#54#89#diseaseC0023434","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#91#96#diseaseC0023434","pred":"source","obj":"DisGeNET5_variant_disease"},{"subj":"9139869-7#175#180#diseaseC0023434","pred":"source","obj":"DisGeNET5_variant_disease"}]},{"project":"DisGeNET5_gene_disease","denotations":[{"id":"9139869-7#215#220#gene4893","span":{"begin":1392,"end":1397},"obj":"gene4893"},{"id":"9139869-7#16#45#diseaseC0079744","span":{"begin":1193,"end":1222},"obj":"diseaseC0079744"},{"id":"9139869-7#54#89#diseaseC0023434","span":{"begin":1231,"end":1266},"obj":"diseaseC0023434"},{"id":"9139869-7#175#180#diseaseC0023434","span":{"begin":1352,"end":1357},"obj":"diseaseC0023434"}],"relations":[{"id":"215#220#gene489316#45#diseaseC0079744","pred":"associated_with","subj":"9139869-7#215#220#gene4893","obj":"9139869-7#16#45#diseaseC0079744"},{"id":"215#220#gene489354#89#diseaseC0023434","pred":"associated_with","subj":"9139869-7#215#220#gene4893","obj":"9139869-7#54#89#diseaseC0023434"},{"id":"215#220#gene4893175#180#diseaseC0023434","pred":"associated_with","subj":"9139869-7#215#220#gene4893","obj":"9139869-7#175#180#diseaseC0023434"}],"attributes":[{"subj":"9139869-7#215#220#gene4893","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"9139869-7#16#45#diseaseC0079744","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"9139869-7#54#89#diseaseC0023434","pred":"source","obj":"DisGeNET5_gene_disease"},{"subj":"9139869-7#175#180#diseaseC0023434","pred":"source","obj":"DisGeNET5_gene_disease"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"PennBioIE","color":"#93ecc6","default":true},{"id":"DisGeNET","color":"#ecac93"},{"id":"DisGeNET5_variant_disease","color":"#9393ec"},{"id":"DisGeNET5_gene_disease","color":"#adec93"}]}]}}