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PubMed:9134435 JSONTXT

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Glycan-Motif

Id Subject Object Predicate Lexical cue
T1 24-33 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen
T2 123-132 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen
T3 286-295 https://glytoucan.org/Structures/Glycans/G00058MO denotes i antigen
T4 326-335 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen
T5 339-359 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamines
T6 507-526 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine
T7 1427-1436 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen
T8 1900-1909 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen
T9 2149-2158 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen

GlyCosmos6-Glycan-Motif-Image

Id Subject Object Predicate Lexical cue image
T1 24-33 Glycan_Motif denotes I antigen https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G56045WU|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46055MA|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G45207BM|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G26929DQ
T5 123-132 Glycan_Motif denotes I antigen https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G56045WU|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46055MA|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G45207BM|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G26929DQ
T9 286-295 Glycan_Motif denotes i antigen https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00058MO
T10 326-335 Glycan_Motif denotes I antigen https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G56045WU|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46055MA|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G45207BM|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G26929DQ
T14 339-359 Glycan_Motif denotes N-acetyllactosamines https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00055MO
T15 507-526 Glycan_Motif denotes N-acetyllactosamine https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G00055MO
T16 1427-1436 Glycan_Motif denotes I antigen https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G56045WU|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46055MA|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G45207BM|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G26929DQ
T20 1900-1909 Glycan_Motif denotes I antigen https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G56045WU|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46055MA|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G45207BM|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G26929DQ
T24 2149-2158 Glycan_Motif denotes I antigen https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G56045WU|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G46055MA|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G45207BM|https://api.glycosmos.org/wurcs2image/0.10.0/png/binary/G26929DQ

Glycosmos6-GlycoEpitope

Id Subject Object Predicate Lexical cue
T1 24-33 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen
T2 123-132 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen
T3 286-295 http://www.glycoepitope.jp/epitopes/EP0139 denotes i antigen
T4 326-335 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen
T5 1427-1436 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen
T6 1900-1909 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen
T7 2149-2158 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-116 Sentence denotes Expression of the large I antigen forming beta-1,6-N-acetylglucosaminyltransferase in various tissues of adult mice.
TextSentencer_T2 117-234 Sentence denotes Large I antigen is specifically formed by a beta-1,6-N-acetylglucosaminyltransferase (IGnT), which is a Golgi enzyme.
TextSentencer_T3 235-360 Sentence denotes IGnT converts a linear carbohydrate structure, the i antigen, to a branched structure, the I antigen in N-acetyllactosamines.
TextSentencer_T4 361-446 Sentence denotes This conversion has been shown to be developmentally regulated in human erythrocytes.
TextSentencer_T5 447-655 Sentence denotes In mouse embryonic development, it has been shown that poly-N-acetyllactosamine plays a critical role in the compaction process (Rastan,S., Thorpe,S.J., Scudder,P., Brown,S., Gooi,H.C., and Feizi,T. (1985) J.
TextSentencer_T6 656-664 Sentence denotes Embryol.
TextSentencer_T7 665-669 Sentence denotes Exp.
TextSentencer_T8 670-694 Sentence denotes Morphol., 87, 115-128.).
TextSentencer_T9 695-840 Sentence denotes In order to understand the regulation of IGnT expression during mouse development, the IGnT transcripts were studied using in situ hybridization.
TextSentencer_T10 841-1003 Sentence denotes The cDNA encoding IGnT was isolated from a murine PCC4 teratocarcinoma cDNA library by nucleic acid hybridization using probes generated from the human IGnT cDNA.
TextSentencer_T11 1004-1144 Sentence denotes The IGnT cDNA was used to produce a fusion protein, which was then used as an immunogen to produce polyclonal antibodies against the enzyme.
TextSentencer_T12 1145-1229 Sentence denotes Nucleotide sequence data was used to design oligonucleotide primers and cDNA probes.
TextSentencer_T13 1230-1437 Sentence denotes The primers and probes, antibodies specific to the fusion protein, and previously obtained human anti-I or i sera, were used to analyze adult and embryonic mouse tissues for expression of IGnT and I antigen.
TextSentencer_T14 1438-1587 Sentence denotes To detect IGnT mRNA, in situ reverse-transcription and polymerase chain reaction were performed on tissue sections using the oligonucleotide primers.
TextSentencer_T15 1588-1672 Sentence denotes Amplified DNA products were detected by in situ hybridization using the cDNA probes.
TextSentencer_T16 1673-1762 Sentence denotes IGnT protein was detected by immunohistochemistry using the IGnT fusion-protein antibody.
TextSentencer_T17 1763-1847 Sentence denotes Expression of the carbohydrate structures was detected using human anti-I or i sera.
TextSentencer_T18 1848-1956 Sentence denotes The results presented demonstrate that IGnT and the I antigen appear in epithelial cells and dividing cells.
TextSentencer_T19 1957-2049 Sentence denotes The antigen also appears to be expressed on cells exposed to the lumenal surface of tissues.
TextSentencer_T20 2050-2225 Sentence denotes These results support the conclusions obtained by the previous studies that IGnT and the resultant I antigen may play critical roles during development and in adult organisms.
T1 0-116 Sentence denotes Expression of the large I antigen forming beta-1,6-N-acetylglucosaminyltransferase in various tissues of adult mice.
T2 117-234 Sentence denotes Large I antigen is specifically formed by a beta-1,6-N-acetylglucosaminyltransferase (IGnT), which is a Golgi enzyme.
T3 235-360 Sentence denotes IGnT converts a linear carbohydrate structure, the i antigen, to a branched structure, the I antigen in N-acetyllactosamines.
T4 361-446 Sentence denotes This conversion has been shown to be developmentally regulated in human erythrocytes.
T5 447-694 Sentence denotes In mouse embryonic development, it has been shown that poly-N-acetyllactosamine plays a critical role in the compaction process (Rastan,S., Thorpe,S.J., Scudder,P., Brown,S., Gooi,H.C., and Feizi,T. (1985) J. Embryol. Exp. Morphol., 87, 115-128.).
T6 695-840 Sentence denotes In order to understand the regulation of IGnT expression during mouse development, the IGnT transcripts were studied using in situ hybridization.
T7 841-1003 Sentence denotes The cDNA encoding IGnT was isolated from a murine PCC4 teratocarcinoma cDNA library by nucleic acid hybridization using probes generated from the human IGnT cDNA.
T8 1004-1144 Sentence denotes The IGnT cDNA was used to produce a fusion protein, which was then used as an immunogen to produce polyclonal antibodies against the enzyme.
T9 1145-1229 Sentence denotes Nucleotide sequence data was used to design oligonucleotide primers and cDNA probes.
T10 1230-1437 Sentence denotes The primers and probes, antibodies specific to the fusion protein, and previously obtained human anti-I or i sera, were used to analyze adult and embryonic mouse tissues for expression of IGnT and I antigen.
T11 1438-1587 Sentence denotes To detect IGnT mRNA, in situ reverse-transcription and polymerase chain reaction were performed on tissue sections using the oligonucleotide primers.
T12 1588-1672 Sentence denotes Amplified DNA products were detected by in situ hybridization using the cDNA probes.
T13 1673-1762 Sentence denotes IGnT protein was detected by immunohistochemistry using the IGnT fusion-protein antibody.
T14 1763-1847 Sentence denotes Expression of the carbohydrate structures was detected using human anti-I or i sera.
T15 1848-1956 Sentence denotes The results presented demonstrate that IGnT and the I antigen appear in epithelial cells and dividing cells.
T16 1957-2049 Sentence denotes The antigen also appears to be expressed on cells exposed to the lumenal surface of tissues.
T17 2050-2225 Sentence denotes These results support the conclusions obtained by the previous studies that IGnT and the resultant I antigen may play critical roles during development and in adult organisms.
T1 0-116 Sentence denotes Expression of the large I antigen forming beta-1,6-N-acetylglucosaminyltransferase in various tissues of adult mice.
T2 117-234 Sentence denotes Large I antigen is specifically formed by a beta-1,6-N-acetylglucosaminyltransferase (IGnT), which is a Golgi enzyme.
T3 235-360 Sentence denotes IGnT converts a linear carbohydrate structure, the i antigen, to a branched structure, the I antigen in N-acetyllactosamines.
T4 361-446 Sentence denotes This conversion has been shown to be developmentally regulated in human erythrocytes.
T5 447-655 Sentence denotes In mouse embryonic development, it has been shown that poly-N-acetyllactosamine plays a critical role in the compaction process (Rastan,S., Thorpe,S.J., Scudder,P., Brown,S., Gooi,H.C., and Feizi,T. (1985) J.
T6 656-664 Sentence denotes Embryol.
T7 665-669 Sentence denotes Exp.
T8 670-694 Sentence denotes Morphol., 87, 115-128.).
T9 695-840 Sentence denotes In order to understand the regulation of IGnT expression during mouse development, the IGnT transcripts were studied using in situ hybridization.
T10 841-1003 Sentence denotes The cDNA encoding IGnT was isolated from a murine PCC4 teratocarcinoma cDNA library by nucleic acid hybridization using probes generated from the human IGnT cDNA.
T11 1004-1144 Sentence denotes The IGnT cDNA was used to produce a fusion protein, which was then used as an immunogen to produce polyclonal antibodies against the enzyme.
T12 1145-1229 Sentence denotes Nucleotide sequence data was used to design oligonucleotide primers and cDNA probes.
T13 1230-1437 Sentence denotes The primers and probes, antibodies specific to the fusion protein, and previously obtained human anti-I or i sera, were used to analyze adult and embryonic mouse tissues for expression of IGnT and I antigen.
T14 1438-1587 Sentence denotes To detect IGnT mRNA, in situ reverse-transcription and polymerase chain reaction were performed on tissue sections using the oligonucleotide primers.
T15 1588-1672 Sentence denotes Amplified DNA products were detected by in situ hybridization using the cDNA probes.
T16 1673-1762 Sentence denotes IGnT protein was detected by immunohistochemistry using the IGnT fusion-protein antibody.
T17 1763-1847 Sentence denotes Expression of the carbohydrate structures was detected using human anti-I or i sera.
T18 1848-1956 Sentence denotes The results presented demonstrate that IGnT and the I antigen appear in epithelial cells and dividing cells.
T19 1957-2049 Sentence denotes The antigen also appears to be expressed on cells exposed to the lumenal surface of tissues.
T20 2050-2225 Sentence denotes These results support the conclusions obtained by the previous studies that IGnT and the resultant I antigen may play critical roles during development and in adult organisms.

GlyCosmos6-Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T1 24-33 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen
T2 123-132 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen
T3 286-295 https://glytoucan.org/Structures/Glycans/G00058MO denotes i antigen
T4 326-335 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen
T5 339-359 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamines
T6 507-526 https://glytoucan.org/Structures/Glycans/G00055MO denotes N-acetyllactosamine
T7 1427-1436 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen
T8 1900-1909 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen
T9 2149-2158 https://glytoucan.org/Structures/Glycans/G26929DQ denotes I antigen

GlycoBiology-FMA

Id Subject Object Predicate Lexical cue
_T1 94-101 FMAID:256050 denotes tissues
_T2 258-270 FMAID:82737 denotes carbohydrate
_T3 258-270 FMAID:197276 denotes carbohydrate
_T4 302-310 FMAID:226028 denotes branched
_T5 302-310 FMAID:226027 denotes branched
_T6 339-359 FMAID:196780 denotes N-acetyllactosamines
_T7 339-359 FMAID:82786 denotes N-acetyllactosamines
_T8 433-445 FMAID:167137 denotes erythrocytes
_T9 433-445 FMAID:62845 denotes erythrocytes
_T10 507-526 FMAID:82786 denotes N-acetyllactosamine
_T11 507-526 FMAID:196780 denotes N-acetyllactosamine
_T12 1047-1054 FMAID:67257 denotes protein
_T13 1047-1054 FMAID:165447 denotes protein
_T14 1114-1124 FMAID:167180 denotes antibodies
_T15 1145-1155 FMAID:82740 denotes Nucleotide
_T16 1145-1155 FMAID:196729 denotes Nucleotide
_T17 1254-1264 FMAID:167180 denotes antibodies
_T18 1288-1295 FMAID:165447 denotes protein
_T19 1288-1295 FMAID:67257 denotes protein
_T20 1392-1399 FMAID:256050 denotes tissues
_T21 1537-1543 FMAID:256050 denotes tissue
_T22 1678-1685 FMAID:165447 denotes protein
_T23 1678-1685 FMAID:67257 denotes protein
_T24 1745-1752 FMAID:67257 denotes protein
_T25 1745-1752 FMAID:165447 denotes protein
_T26 1753-1761 FMAID:167180 denotes antibody
_T27 1781-1793 FMAID:82737 denotes carbohydrate
_T28 1781-1793 FMAID:197276 denotes carbohydrate
_T29 1917-1936 FMAID:165528 denotes in epithelial cells
_T30 1917-1936 FMAID:67559 denotes in epithelial cells
_T31 1920-1936 FMAID:66768 denotes epithelial cells
_T32 1920-1936 FMAID:67799 denotes epithelial cells
_T33 1920-1936 FMAID:197786 denotes epithelial cells
_T34 1920-1936 FMAID:83514 denotes epithelial cells
_T35 1920-1936 FMAID:164922 denotes epithelial cells
_T36 1920-1936 FMAID:69075 denotes epithelial cells
_T37 1920-1936 FMAID:169652 denotes epithelial cells
_T38 1920-1936 FMAID:69074 denotes epithelial cells
_T39 1920-1936 FMAID:165731 denotes epithelial cells
_T40 1920-1936 FMAID:169653 denotes epithelial cells
_T41 1931-1936 FMAID:68646 denotes cells
_T42 1931-1936 FMAID:169002 denotes cells
_T43 1950-1955 FMAID:68646 denotes cells
_T44 1950-1955 FMAID:169002 denotes cells
_T45 2001-2006 FMAID:169002 denotes cells
_T46 2001-2006 FMAID:68646 denotes cells
_T47 2030-2037 FMAID:50594 denotes surface
_T48 2030-2037 FMAID:146300 denotes surface
_T49 2030-2048 FMAID:67640 denotes surface of tissues
_T50 2030-2048 FMAID:165563 denotes surface of tissues
_T51 2030-2048 FMAID:118150 denotes surface of tissues
_T52 2041-2048 FMAID:256050 denotes tissues
_T53 2215-2224 FMAID:67498 denotes organisms
_T54 2215-2224 FMAID:166081 denotes organisms

uniprot-human

Id Subject Object Predicate Lexical cue
T1 51-82 http://www.uniprot.org/uniprot/Q06430 denotes N-acetylglucosaminyltransferase
T2 170-201 http://www.uniprot.org/uniprot/Q06430 denotes N-acetylglucosaminyltransferase
T3 51-82 http://www.uniprot.org/uniprot/Q8N0V5 denotes N-acetylglucosaminyltransferase
T4 170-201 http://www.uniprot.org/uniprot/Q8N0V5 denotes N-acetylglucosaminyltransferase
T5 51-82 http://www.uniprot.org/uniprot/Q8NFS9 denotes N-acetylglucosaminyltransferase
T6 170-201 http://www.uniprot.org/uniprot/Q8NFS9 denotes N-acetylglucosaminyltransferase

uniprot-mouse

Id Subject Object Predicate Lexical cue
T1 51-82 http://www.uniprot.org/uniprot/P97402 denotes N-acetylglucosaminyltransferase
T2 170-201 http://www.uniprot.org/uniprot/P97402 denotes N-acetylglucosaminyltransferase
T3 665-668 http://www.uniprot.org/uniprot/Q9JKP5 denotes Exp

GlycoBiology-NCBITAXON

Id Subject Object Predicate Lexical cue
T1 42-46 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta
T2 42-46 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T3 94-101 http://purl.bioontology.org/ontology/STY/T024 denotes tissues
T4 161-165 http://purl.bioontology.org/ontology/NCBITAXON/3554 denotes beta
T5 161-165 http://purl.bioontology.org/ontology/NCBITAXON/158455 denotes beta
T6 1145-1164 http://purl.bioontology.org/ontology/STY/T086 denotes Nucleotide sequence
T7 1392-1399 http://purl.bioontology.org/ontology/STY/T024 denotes tissues
T8 1537-1543 http://purl.bioontology.org/ontology/STY/T024 denotes tissue
T9 1931-1936 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T10 1950-1955 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T11 2001-2006 http://purl.bioontology.org/ontology/STY/T025 denotes cells
T12 2041-2048 http://purl.bioontology.org/ontology/STY/T024 denotes tissues

GO-BP

Id Subject Object Predicate Lexical cue
T1 414-423 http://purl.obolibrary.org/obo/GO_0065007 denotes regulated
T2 722-732 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T3 456-477 http://purl.obolibrary.org/obo/GO_0009790 denotes embryonic development
T4 466-477 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T5 765-776 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T6 2190-2201 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T7 787-798 http://purl.obolibrary.org/obo/GO_0006351 denotes transcripts
T8 1475-1488 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T9 1339-1343 http://purl.obolibrary.org/obo/GO_0004617 denotes sera
T10 1842-1846 http://purl.obolibrary.org/obo/GO_0004617 denotes sera
T11 1467-1488 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse-transcription

GO-MF

Id Subject Object Predicate Lexical cue
T1 1114-1124 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T2 1254-1264 http://purl.obolibrary.org/obo/GO_0003823 denotes antibodies
T3 1753-1761 http://purl.obolibrary.org/obo/GO_0003823 denotes antibody

GO-CC

Id Subject Object Predicate Lexical cue
T1 221-226 http://purl.obolibrary.org/obo/GO_0005794 denotes Golgi
T2 1931-1936 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T3 1950-1955 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T4 2001-2006 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

UBERON-AE

Id Subject Object Predicate Lexical cue
T1 94-101 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T2 1392-1399 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
T3 1537-1543 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
T4 2209-2224 http://purl.obolibrary.org/obo/UBERON_0007023 denotes adult organisms
T5 2215-2224 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organisms

GlycoBiology-Epitope

Id Subject Object Predicate Lexical cue
PD-GlycoEpitope-B_T1 24-33 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen
PD-GlycoEpitope-B_T2 123-132 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen
PD-GlycoEpitope-B_T3 286-295 http://www.glycoepitope.jp/epitopes/EP0138 denotes i antigen
PD-GlycoEpitope-B_T4 326-335 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen
PD-GlycoEpitope-B_T5 1427-1436 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen
PD-GlycoEpitope-B_T6 1900-1909 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen
PD-GlycoEpitope-B_T7 2149-2158 http://www.glycoepitope.jp/epitopes/EP0138 denotes I antigen
PD-GlycoEpitope-B_T8 24-33 http://www.glycoepitope.jp/epitopes/EP0139 denotes I antigen
PD-GlycoEpitope-B_T9 123-132 http://www.glycoepitope.jp/epitopes/EP0139 denotes I antigen
PD-GlycoEpitope-B_T10 286-295 http://www.glycoepitope.jp/epitopes/EP0139 denotes i antigen
PD-GlycoEpitope-B_T11 326-335 http://www.glycoepitope.jp/epitopes/EP0139 denotes I antigen
PD-GlycoEpitope-B_T12 1427-1436 http://www.glycoepitope.jp/epitopes/EP0139 denotes I antigen
PD-GlycoEpitope-B_T13 1900-1909 http://www.glycoepitope.jp/epitopes/EP0139 denotes I antigen
PD-GlycoEpitope-B_T14 2149-2158 http://www.glycoepitope.jp/epitopes/EP0139 denotes I antigen

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 2215-2224 http://purl.obolibrary.org/obo/UBERON_0000062 denotes organisms
PD-UBERON-AE-B_T2 94-101 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
PD-UBERON-AE-B_T3 1392-1399 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
PD-UBERON-AE-B_T4 1537-1543 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissue
PD-UBERON-AE-B_T5 2041-2048 http://purl.obolibrary.org/obo/UBERON_0000479 denotes tissues
PD-UBERON-AE-B_T6 2209-2224 http://purl.obolibrary.org/obo/UBERON_0007023 denotes adult organisms

mondo_disease

Id Subject Object Predicate Lexical cue mondo_id
T1 896-911 Disease denotes teratocarcinoma http://purl.obolibrary.org/obo/MONDO_0002599

Glycan-GlyCosmos

Id Subject Object Predicate Lexical cue image
T1 24-33 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU
T2 123-132 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU
T3 286-295 Glycan denotes i antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G00058MO
T4 326-335 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU
T5 1427-1436 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU
T6 1900-1909 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU
T7 2149-2158 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU

GlyCosmos-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 24-33 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138
T2 123-132 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138
T3 286-295 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes i antigen http://www.glycoepitope.jp/epitopes/EP0139
T4 326-335 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138
T5 1427-1436 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138
T6 1900-1909 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138
T7 2149-2158 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138

GlyCosmos15-NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 111-115 OrganismTaxon denotes mice 10088
T2 427-432 OrganismTaxon denotes human 9606
T3 450-455 OrganismTaxon denotes mouse 10088|10090
T5 759-764 OrganismTaxon denotes mouse 10088|10090
T7 987-992 OrganismTaxon denotes human 9606
T8 1321-1326 OrganismTaxon denotes human 9606
T9 1386-1391 OrganismTaxon denotes mouse 10088|10090
T11 1824-1829 OrganismTaxon denotes human 9606

GlyCosmos15-CL

Id Subject Object Predicate Lexical cue cl_id
T1 433-445 Cell denotes erythrocytes http://purl.obolibrary.org/obo/CL:0000232
T2 502-506 Cell denotes poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T4 1920-1936 Cell denotes epithelial cells http://purl.obolibrary.org/obo/CL:0000066

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-116 Sentence denotes Expression of the large I antigen forming beta-1,6-N-acetylglucosaminyltransferase in various tissues of adult mice.
TextSentencer_T2 117-234 Sentence denotes Large I antigen is specifically formed by a beta-1,6-N-acetylglucosaminyltransferase (IGnT), which is a Golgi enzyme.
TextSentencer_T3 235-360 Sentence denotes IGnT converts a linear carbohydrate structure, the i antigen, to a branched structure, the I antigen in N-acetyllactosamines.
TextSentencer_T4 361-446 Sentence denotes This conversion has been shown to be developmentally regulated in human erythrocytes.
TextSentencer_T5 447-655 Sentence denotes In mouse embryonic development, it has been shown that poly-N-acetyllactosamine plays a critical role in the compaction process (Rastan,S., Thorpe,S.J., Scudder,P., Brown,S., Gooi,H.C., and Feizi,T. (1985) J.
TextSentencer_T6 656-664 Sentence denotes Embryol.
TextSentencer_T7 665-669 Sentence denotes Exp.
TextSentencer_T8 670-694 Sentence denotes Morphol., 87, 115-128.).
TextSentencer_T9 695-840 Sentence denotes In order to understand the regulation of IGnT expression during mouse development, the IGnT transcripts were studied using in situ hybridization.
TextSentencer_T10 841-1003 Sentence denotes The cDNA encoding IGnT was isolated from a murine PCC4 teratocarcinoma cDNA library by nucleic acid hybridization using probes generated from the human IGnT cDNA.
TextSentencer_T11 1004-1144 Sentence denotes The IGnT cDNA was used to produce a fusion protein, which was then used as an immunogen to produce polyclonal antibodies against the enzyme.
TextSentencer_T12 1145-1229 Sentence denotes Nucleotide sequence data was used to design oligonucleotide primers and cDNA probes.
TextSentencer_T13 1230-1437 Sentence denotes The primers and probes, antibodies specific to the fusion protein, and previously obtained human anti-I or i sera, were used to analyze adult and embryonic mouse tissues for expression of IGnT and I antigen.
TextSentencer_T14 1438-1587 Sentence denotes To detect IGnT mRNA, in situ reverse-transcription and polymerase chain reaction were performed on tissue sections using the oligonucleotide primers.
TextSentencer_T15 1588-1672 Sentence denotes Amplified DNA products were detected by in situ hybridization using the cDNA probes.
TextSentencer_T16 1673-1762 Sentence denotes IGnT protein was detected by immunohistochemistry using the IGnT fusion-protein antibody.
TextSentencer_T17 1763-1847 Sentence denotes Expression of the carbohydrate structures was detected using human anti-I or i sera.
TextSentencer_T18 1848-1956 Sentence denotes The results presented demonstrate that IGnT and the I antigen appear in epithelial cells and dividing cells.
TextSentencer_T19 1957-2049 Sentence denotes The antigen also appears to be expressed on cells exposed to the lumenal surface of tissues.
TextSentencer_T20 2050-2225 Sentence denotes These results support the conclusions obtained by the previous studies that IGnT and the resultant I antigen may play critical roles during development and in adult organisms.
T1 0-116 Sentence denotes Expression of the large I antigen forming beta-1,6-N-acetylglucosaminyltransferase in various tissues of adult mice.
T2 117-234 Sentence denotes Large I antigen is specifically formed by a beta-1,6-N-acetylglucosaminyltransferase (IGnT), which is a Golgi enzyme.
T3 235-360 Sentence denotes IGnT converts a linear carbohydrate structure, the i antigen, to a branched structure, the I antigen in N-acetyllactosamines.
T4 361-446 Sentence denotes This conversion has been shown to be developmentally regulated in human erythrocytes.
T5 447-694 Sentence denotes In mouse embryonic development, it has been shown that poly-N-acetyllactosamine plays a critical role in the compaction process (Rastan,S., Thorpe,S.J., Scudder,P., Brown,S., Gooi,H.C., and Feizi,T. (1985) J. Embryol. Exp. Morphol., 87, 115-128.).
T6 695-840 Sentence denotes In order to understand the regulation of IGnT expression during mouse development, the IGnT transcripts were studied using in situ hybridization.
T7 841-1003 Sentence denotes The cDNA encoding IGnT was isolated from a murine PCC4 teratocarcinoma cDNA library by nucleic acid hybridization using probes generated from the human IGnT cDNA.
T8 1004-1144 Sentence denotes The IGnT cDNA was used to produce a fusion protein, which was then used as an immunogen to produce polyclonal antibodies against the enzyme.
T9 1145-1229 Sentence denotes Nucleotide sequence data was used to design oligonucleotide primers and cDNA probes.
T10 1230-1437 Sentence denotes The primers and probes, antibodies specific to the fusion protein, and previously obtained human anti-I or i sera, were used to analyze adult and embryonic mouse tissues for expression of IGnT and I antigen.
T11 1438-1587 Sentence denotes To detect IGnT mRNA, in situ reverse-transcription and polymerase chain reaction were performed on tissue sections using the oligonucleotide primers.
T12 1588-1672 Sentence denotes Amplified DNA products were detected by in situ hybridization using the cDNA probes.
T13 1673-1762 Sentence denotes IGnT protein was detected by immunohistochemistry using the IGnT fusion-protein antibody.
T14 1763-1847 Sentence denotes Expression of the carbohydrate structures was detected using human anti-I or i sera.
T15 1848-1956 Sentence denotes The results presented demonstrate that IGnT and the I antigen appear in epithelial cells and dividing cells.
T16 1957-2049 Sentence denotes The antigen also appears to be expressed on cells exposed to the lumenal surface of tissues.
T17 2050-2225 Sentence denotes These results support the conclusions obtained by the previous studies that IGnT and the resultant I antigen may play critical roles during development and in adult organisms.
T1 0-116 Sentence denotes Expression of the large I antigen forming beta-1,6-N-acetylglucosaminyltransferase in various tissues of adult mice.
T2 117-234 Sentence denotes Large I antigen is specifically formed by a beta-1,6-N-acetylglucosaminyltransferase (IGnT), which is a Golgi enzyme.
T3 235-360 Sentence denotes IGnT converts a linear carbohydrate structure, the i antigen, to a branched structure, the I antigen in N-acetyllactosamines.
T4 361-446 Sentence denotes This conversion has been shown to be developmentally regulated in human erythrocytes.
T5 447-655 Sentence denotes In mouse embryonic development, it has been shown that poly-N-acetyllactosamine plays a critical role in the compaction process (Rastan,S., Thorpe,S.J., Scudder,P., Brown,S., Gooi,H.C., and Feizi,T. (1985) J.
T6 656-664 Sentence denotes Embryol.
T7 665-669 Sentence denotes Exp.
T8 670-694 Sentence denotes Morphol., 87, 115-128.).
T9 695-840 Sentence denotes In order to understand the regulation of IGnT expression during mouse development, the IGnT transcripts were studied using in situ hybridization.
T10 841-1003 Sentence denotes The cDNA encoding IGnT was isolated from a murine PCC4 teratocarcinoma cDNA library by nucleic acid hybridization using probes generated from the human IGnT cDNA.
T11 1004-1144 Sentence denotes The IGnT cDNA was used to produce a fusion protein, which was then used as an immunogen to produce polyclonal antibodies against the enzyme.
T12 1145-1229 Sentence denotes Nucleotide sequence data was used to design oligonucleotide primers and cDNA probes.
T13 1230-1437 Sentence denotes The primers and probes, antibodies specific to the fusion protein, and previously obtained human anti-I or i sera, were used to analyze adult and embryonic mouse tissues for expression of IGnT and I antigen.
T14 1438-1587 Sentence denotes To detect IGnT mRNA, in situ reverse-transcription and polymerase chain reaction were performed on tissue sections using the oligonucleotide primers.
T15 1588-1672 Sentence denotes Amplified DNA products were detected by in situ hybridization using the cDNA probes.
T16 1673-1762 Sentence denotes IGnT protein was detected by immunohistochemistry using the IGnT fusion-protein antibody.
T17 1763-1847 Sentence denotes Expression of the carbohydrate structures was detected using human anti-I or i sera.
T18 1848-1956 Sentence denotes The results presented demonstrate that IGnT and the I antigen appear in epithelial cells and dividing cells.
T19 1957-2049 Sentence denotes The antigen also appears to be expressed on cells exposed to the lumenal surface of tissues.
T20 2050-2225 Sentence denotes These results support the conclusions obtained by the previous studies that IGnT and the resultant I antigen may play critical roles during development and in adult organisms.

GlyCosmos15-Sentences

Id Subject Object Predicate Lexical cue
T1 0-116 Sentence denotes Expression of the large I antigen forming beta-1,6-N-acetylglucosaminyltransferase in various tissues of adult mice.
T2 117-234 Sentence denotes Large I antigen is specifically formed by a beta-1,6-N-acetylglucosaminyltransferase (IGnT), which is a Golgi enzyme.
T3 235-360 Sentence denotes IGnT converts a linear carbohydrate structure, the i antigen, to a branched structure, the I antigen in N-acetyllactosamines.
T4 361-446 Sentence denotes This conversion has been shown to be developmentally regulated in human erythrocytes.
T5 447-694 Sentence denotes In mouse embryonic development, it has been shown that poly-N-acetyllactosamine plays a critical role in the compaction process (Rastan,S., Thorpe,S.J., Scudder,P., Brown,S., Gooi,H.C., and Feizi,T. (1985) J. Embryol. Exp. Morphol., 87, 115-128.).
T6 695-840 Sentence denotes In order to understand the regulation of IGnT expression during mouse development, the IGnT transcripts were studied using in situ hybridization.
T7 841-1003 Sentence denotes The cDNA encoding IGnT was isolated from a murine PCC4 teratocarcinoma cDNA library by nucleic acid hybridization using probes generated from the human IGnT cDNA.
T8 1004-1144 Sentence denotes The IGnT cDNA was used to produce a fusion protein, which was then used as an immunogen to produce polyclonal antibodies against the enzyme.
T9 1145-1229 Sentence denotes Nucleotide sequence data was used to design oligonucleotide primers and cDNA probes.
T10 1230-1437 Sentence denotes The primers and probes, antibodies specific to the fusion protein, and previously obtained human anti-I or i sera, were used to analyze adult and embryonic mouse tissues for expression of IGnT and I antigen.
T11 1438-1587 Sentence denotes To detect IGnT mRNA, in situ reverse-transcription and polymerase chain reaction were performed on tissue sections using the oligonucleotide primers.
T12 1588-1672 Sentence denotes Amplified DNA products were detected by in situ hybridization using the cDNA probes.
T13 1673-1762 Sentence denotes IGnT protein was detected by immunohistochemistry using the IGnT fusion-protein antibody.
T14 1763-1847 Sentence denotes Expression of the carbohydrate structures was detected using human anti-I or i sera.
T15 1848-1956 Sentence denotes The results presented demonstrate that IGnT and the I antigen appear in epithelial cells and dividing cells.
T16 1957-2049 Sentence denotes The antigen also appears to be expressed on cells exposed to the lumenal surface of tissues.
T17 2050-2225 Sentence denotes These results support the conclusions obtained by the previous studies that IGnT and the resultant I antigen may play critical roles during development and in adult organisms.

GlyCosmos15-GlycoEpitope

Id Subject Object Predicate Lexical cue glycoepitope_id
T1 24-33 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138
T2 123-132 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138
T3 286-295 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes i antigen http://www.glycoepitope.jp/epitopes/EP0139
T4 326-335 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138
T5 1427-1436 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138
T6 1900-1909 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138
T7 2149-2158 http://purl.jp/bio/12/glyco/glycan#Glycan_epitope denotes I antigen http://www.glycoepitope.jp/epitopes/EP0138

GlyCosmos15-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T1 896-911 Disease denotes teratocarcinoma MONDO:0002599

GlyCosmos15-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 221-226 Body_part denotes Golgi http://purl.obolibrary.org/obo/GO_0005794
T2 433-445 Body_part denotes erythrocytes http://purl.obolibrary.org/obo/CL_0000232
T3 1537-1543 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T4 1920-1936 Body_part denotes epithelial cells http://purl.obolibrary.org/obo/CL_0000066
T5 2209-2224 Body_part denotes adult organisms http://purl.obolibrary.org/obo/UBERON_0007023

GlyCosmos15-FMA

Id Subject Object Predicate Lexical cue db_id
T1 94-101 Body_part denotes tissues FMA:9637
T2 433-445 Body_part denotes erythrocytes FMA:62845
T3 1392-1399 Body_part denotes tissues FMA:9637
T4 1537-1543 Body_part denotes tissue FMA:9637
T5 1920-1936 Body_part denotes epithelial cells FMA:66768
T6 2030-2048 Body_part denotes surface of tissues FMA:67640

GlyCosmos15-Glycan

Id Subject Object Predicate Lexical cue image
T1 24-33 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU
T2 123-132 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU
T3 286-295 Glycan denotes i antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G00058MO
T4 326-335 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU
T5 1427-1436 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU
T6 1900-1909 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU
T7 2149-2158 Glycan denotes I antigen https://api.glycosmos.org/wurcs2image/latest/png/binary/G56045WU

NCBITAXON

Id Subject Object Predicate Lexical cue db_id
T1 111-115 OrganismTaxon denotes mice 10088
T2 427-432 OrganismTaxon denotes human 9606
T3 450-455 OrganismTaxon denotes mouse 10088|10090
T5 759-764 OrganismTaxon denotes mouse 10088|10090
T7 987-992 OrganismTaxon denotes human 9606
T8 1321-1326 OrganismTaxon denotes human 9606
T9 1386-1391 OrganismTaxon denotes mouse 10088|10090
T11 1824-1829 OrganismTaxon denotes human 9606

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 221-226 Body_part denotes Golgi http://purl.obolibrary.org/obo/GO_0005794
T2 433-445 Body_part denotes erythrocytes http://purl.obolibrary.org/obo/CL_0000232
T3 1537-1543 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T4 1920-1936 Body_part denotes epithelial cells http://purl.obolibrary.org/obo/CL_0000066
T5 2209-2224 Body_part denotes adult organisms http://purl.obolibrary.org/obo/UBERON_0007023

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 433-445 Cell denotes erythrocytes http://purl.obolibrary.org/obo/CL:0000232
T2 502-506 Cell denotes poly http://purl.obolibrary.org/obo/CL:0000096|http://purl.obolibrary.org/obo/CL:0000775
T4 1920-1936 Cell denotes epithelial cells http://purl.obolibrary.org/obo/CL:0000066