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PubMed:9130477 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 28-36 DNA denotes germline
T2 60-93 protein denotes B-cell-specific activator protein
T3 95-115 protein denotes Germline transcripts
T4 130-139 DNA denotes promoters
T5 156-184 DNA denotes immunoglobulin switch region
T6 287-296 protein denotes cytokines
T7 339-356 DNA denotes germline promoter
T8 366-379 DNA denotes binding sites
T9 384-417 protein denotes B-cell-specific activator protein
T10 419-423 protein denotes BSAP
T11 479-518 DNA denotes immunoglobulin heavy chain gene cluster
T12 520-524 protein denotes BSAP
T13 564-572 DNA denotes germline
T14 634-638 protein denotes BSAP
T15 701-718 DNA denotes germline promoter
T16 722-735 cell_type denotes human B cells
T17 761-765 protein denotes BSAP
T18 787-791 protein denotes IL-4
T19 816-820 protein denotes CD40
T20 860-868 DNA denotes germline
T21 884-888 protein denotes BSAP
T22 909-930 protein denotes transcription factors
T23 953-961 DNA denotes germline
T24 1082-1085 protein denotes IgE

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 14-50 NP denotes human epsilon germline transcription
C1 0-50 NP denotes Regulation of human epsilon germline transcription
C3 60-93 NP denotes B-cell-specific activator protein
C4 384-424 NP denotes B-cell-specific activator protein (BSAP)
C5 520-524 NP denotes BSAP
C6 546-586 NP denotes the regulation of germline transcription
C7 634-638 NP denotes BSAP
C8 761-765 NP denotes BSAP
C9 846-882 NP denotes human epsilon germline transcription
C10 884-888 NP denotes BSAP
C11 905-930 NP denotes the transcription factors
C12 931-935 NP denotes that
C13 982-984 NP denotes it
C14 1036-1059 NP denotes two signalling pathways
C15 1060-1064 NP denotes that
R1 C4 C3 coref-ident B-cell-specific activator protein (BSAP),B-cell-specific activator protein
R2 C5 C4 coref-ident BSAP,B-cell-specific activator protein (BSAP)
R3 C6 C1 coref-ident the regulation of germline transcription,Regulation of human epsilon germline transcription
R4 C7 C5 coref-ident BSAP,BSAP
R5 C8 C7 coref-ident BSAP,BSAP
R6 C9 C2 coref-ident human epsilon germline transcription,human epsilon germline transcription
R7 C10 C8 coref-ident BSAP,BSAP
R8 C12 C11 coref-relat that,the transcription factors
R9 C13 C10 coref-pron it,BSAP
R10 C15 C14 coref-relat that,two signalling pathways

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-94 Sentence denotes Regulation of human epsilon germline transcription: role of B-cell-specific activator protein.
S2 95-276 Sentence denotes Germline transcripts initiate from promoters upstream of the immunoglobulin switch region, and are necessary to target the appropriate switch region for recombination and switching.
S3 277-357 Sentence denotes Different cytokines activate transcription at the appropriate germline promoter.
S4 358-609 Sentence denotes Because binding sites for B-cell-specific activator protein (BSAP) are located upstream of several switch regions in the immunoglobulin heavy chain gene cluster, BSAP might play a role in the regulation of germline transcription and isotype switching.
S5 610-736 Sentence denotes We investigated whether BSAP plays a role in the transcriptional regulation of the epsilon germline promoter in human B cells.
S6 737-883 Sentence denotes Our results showed that BSAP plays a role in both IL-4-dependent induction and CD40-mediated upregulation of human epsilon germline transcription.
S7 884-1096 Sentence denotes BSAP is unique among the transcription factors that regulate epsilon germline expression, because it is B cell specific, and is at the merging point of two signalling pathways that are critical for IgE switching.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 14-27 other_name denotes human epsilon
T2 28-36 DNA_domain_or_region denotes germline
T3 60-93 protein_molecule denotes B-cell-specific activator protein
T4 95-115 protein_family_or_group denotes Germline transcripts
T5 130-139 DNA_domain_or_region denotes promoters
T6 156-184 DNA_domain_or_region denotes immunoglobulin switch region
T7 248-261 other_name denotes recombination
T8 287-296 protein_family_or_group denotes cytokines
T9 339-356 DNA_domain_or_region denotes germline promoter
T10 366-379 DNA_domain_or_region denotes binding sites
T11 384-417 protein_molecule denotes B-cell-specific activator protein
T12 419-423 protein_molecule denotes BSAP
T13 479-518 DNA_domain_or_region denotes immunoglobulin heavy chain gene cluster
T14 520-524 protein_molecule denotes BSAP
T15 564-572 DNA_domain_or_region denotes germline
T16 591-608 other_name denotes isotype switching
T17 634-638 protein_molecule denotes BSAP
T18 659-685 other_name denotes transcriptional regulation
T19 701-718 DNA_domain_or_region denotes germline promoter
T20 722-735 cell_type denotes human B cells
T21 761-765 protein_molecule denotes BSAP
T22 787-791 protein_molecule denotes IL-4
T23 816-820 protein_molecule denotes CD40
T24 846-859 other_name denotes human epsilon
T25 860-868 DNA_domain_or_region denotes germline
T26 884-888 protein_molecule denotes BSAP
T27 909-930 protein_family_or_group denotes transcription factors
T28 945-952 other_name denotes epsilon
T29 953-961 DNA_domain_or_region denotes germline
T30 1040-1059 other_name denotes signalling pathways
T31 1082-1085 protein_family_or_group denotes IgE