PubMed:9130477
Annnotations
jnlpba-st-training
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 28-36 | DNA | denotes | germline |
| T2 | 60-93 | protein | denotes | B-cell-specific activator protein |
| T3 | 95-115 | protein | denotes | Germline transcripts |
| T4 | 130-139 | DNA | denotes | promoters |
| T5 | 156-184 | DNA | denotes | immunoglobulin switch region |
| T6 | 287-296 | protein | denotes | cytokines |
| T7 | 339-356 | DNA | denotes | germline promoter |
| T8 | 366-379 | DNA | denotes | binding sites |
| T9 | 384-417 | protein | denotes | B-cell-specific activator protein |
| T10 | 419-423 | protein | denotes | BSAP |
| T11 | 479-518 | DNA | denotes | immunoglobulin heavy chain gene cluster |
| T12 | 520-524 | protein | denotes | BSAP |
| T13 | 564-572 | DNA | denotes | germline |
| T14 | 634-638 | protein | denotes | BSAP |
| T15 | 701-718 | DNA | denotes | germline promoter |
| T16 | 722-735 | cell_type | denotes | human B cells |
| T17 | 761-765 | protein | denotes | BSAP |
| T18 | 787-791 | protein | denotes | IL-4 |
| T19 | 816-820 | protein | denotes | CD40 |
| T20 | 860-868 | DNA | denotes | germline |
| T21 | 884-888 | protein | denotes | BSAP |
| T22 | 909-930 | protein | denotes | transcription factors |
| T23 | 953-961 | DNA | denotes | germline |
| T24 | 1082-1085 | protein | denotes | IgE |
genia-medco-coref
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| C2 | 14-50 | NP | denotes | human epsilon germline transcription |
| C1 | 0-50 | NP | denotes | Regulation of human epsilon germline transcription |
| C3 | 60-93 | NP | denotes | B-cell-specific activator protein |
| C4 | 384-424 | NP | denotes | B-cell-specific activator protein (BSAP) |
| C5 | 520-524 | NP | denotes | BSAP |
| C6 | 546-586 | NP | denotes | the regulation of germline transcription |
| C7 | 634-638 | NP | denotes | BSAP |
| C8 | 761-765 | NP | denotes | BSAP |
| C9 | 846-882 | NP | denotes | human epsilon germline transcription |
| C10 | 884-888 | NP | denotes | BSAP |
| C11 | 905-930 | NP | denotes | the transcription factors |
| C12 | 931-935 | NP | denotes | that |
| C13 | 982-984 | NP | denotes | it |
| C14 | 1036-1059 | NP | denotes | two signalling pathways |
| C15 | 1060-1064 | NP | denotes | that |
| R1 | C4 | C3 | coref-ident | B-cell-specific activator protein (BSAP),B-cell-specific activator protein |
| R2 | C5 | C4 | coref-ident | BSAP,B-cell-specific activator protein (BSAP) |
| R3 | C6 | C1 | coref-ident | the regulation of germline transcription,Regulation of human epsilon germline transcription |
| R4 | C7 | C5 | coref-ident | BSAP,BSAP |
| R5 | C8 | C7 | coref-ident | BSAP,BSAP |
| R6 | C9 | C2 | coref-ident | human epsilon germline transcription,human epsilon germline transcription |
| R7 | C10 | C8 | coref-ident | BSAP,BSAP |
| R8 | C12 | C11 | coref-relat | that,the transcription factors |
| R9 | C13 | C10 | coref-pron | it,BSAP |
| R10 | C15 | C14 | coref-relat | that,two signalling pathways |
pubmed-sentences-benchmark
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| S1 | 0-94 | Sentence | denotes | Regulation of human epsilon germline transcription: role of B-cell-specific activator protein. |
| S2 | 95-276 | Sentence | denotes | Germline transcripts initiate from promoters upstream of the immunoglobulin switch region, and are necessary to target the appropriate switch region for recombination and switching. |
| S3 | 277-357 | Sentence | denotes | Different cytokines activate transcription at the appropriate germline promoter. |
| S4 | 358-609 | Sentence | denotes | Because binding sites for B-cell-specific activator protein (BSAP) are located upstream of several switch regions in the immunoglobulin heavy chain gene cluster, BSAP might play a role in the regulation of germline transcription and isotype switching. |
| S5 | 610-736 | Sentence | denotes | We investigated whether BSAP plays a role in the transcriptional regulation of the epsilon germline promoter in human B cells. |
| S6 | 737-883 | Sentence | denotes | Our results showed that BSAP plays a role in both IL-4-dependent induction and CD40-mediated upregulation of human epsilon germline transcription. |
| S7 | 884-1096 | Sentence | denotes | BSAP is unique among the transcription factors that regulate epsilon germline expression, because it is B cell specific, and is at the merging point of two signalling pathways that are critical for IgE switching. |
GENIAcorpus
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 14-27 | other_name | denotes | human epsilon |
| T2 | 28-36 | DNA_domain_or_region | denotes | germline |
| T3 | 60-93 | protein_molecule | denotes | B-cell-specific activator protein |
| T4 | 95-115 | protein_family_or_group | denotes | Germline transcripts |
| T5 | 130-139 | DNA_domain_or_region | denotes | promoters |
| T6 | 156-184 | DNA_domain_or_region | denotes | immunoglobulin switch region |
| T7 | 248-261 | other_name | denotes | recombination |
| T8 | 287-296 | protein_family_or_group | denotes | cytokines |
| T9 | 339-356 | DNA_domain_or_region | denotes | germline promoter |
| T10 | 366-379 | DNA_domain_or_region | denotes | binding sites |
| T11 | 384-417 | protein_molecule | denotes | B-cell-specific activator protein |
| T12 | 419-423 | protein_molecule | denotes | BSAP |
| T13 | 479-518 | DNA_domain_or_region | denotes | immunoglobulin heavy chain gene cluster |
| T14 | 520-524 | protein_molecule | denotes | BSAP |
| T15 | 564-572 | DNA_domain_or_region | denotes | germline |
| T16 | 591-608 | other_name | denotes | isotype switching |
| T17 | 634-638 | protein_molecule | denotes | BSAP |
| T18 | 659-685 | other_name | denotes | transcriptional regulation |
| T19 | 701-718 | DNA_domain_or_region | denotes | germline promoter |
| T20 | 722-735 | cell_type | denotes | human B cells |
| T21 | 761-765 | protein_molecule | denotes | BSAP |
| T22 | 787-791 | protein_molecule | denotes | IL-4 |
| T23 | 816-820 | protein_molecule | denotes | CD40 |
| T24 | 846-859 | other_name | denotes | human epsilon |
| T25 | 860-868 | DNA_domain_or_region | denotes | germline |
| T26 | 884-888 | protein_molecule | denotes | BSAP |
| T27 | 909-930 | protein_family_or_group | denotes | transcription factors |
| T28 | 945-952 | other_name | denotes | epsilon |
| T29 | 953-961 | DNA_domain_or_region | denotes | germline |
| T30 | 1040-1059 | other_name | denotes | signalling pathways |
| T31 | 1082-1085 | protein_family_or_group | denotes | IgE |