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PubMed:9081693 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 18-36 DNA denotes tissue factor gene
T2 40-61 cell_type denotes human monocytic cells
T3 71-75 protein denotes AP-1
T4 77-91 protein denotes NF-kappa B/Rel
T5 97-100 protein denotes Sp1
T6 166-179 protein denotes Tissue factor
T7 199-225 cell_type denotes peripheral blood monocytes
T8 327-334 DNA denotes TF gene
T9 352-361 cell_type denotes monocytes
T10 367-384 DNA denotes human TF promoter
T11 438-442 protein denotes AP-1
T12 444-453 protein denotes c-Rel/p65
T13 455-460 protein denotes Egr-1
T14 466-469 protein denotes Sp1
T15 471-494 protein denotes NF-kappa B/Rel proteins
T16 544-565 protein denotes AP-1 and Sp1 proteins
T17 616-637 protein denotes transcription factors
T18 667-674 DNA denotes TF gene
T19 689-716 cell_type denotes human monocytic THP-1 cells
T20 758-767 DNA denotes Sp1 sites
T21 797-812 cell_type denotes uninduced cells
T22 822-832 DNA denotes AP-1 sites
T23 839-863 protein denotes c-Fos/c-Jun heterodimers
T24 872-909 cell_type denotes unstimulated and LPS-stimulated cells
T25 940-951 DNA denotes TF promoter
T26 969-973 protein denotes AP-1
T27 988-1000 DNA denotes kappa B site
T28 1012-1032 DNA denotes LPS response element
T29 1082-1100 DNA denotes proximal AP-1 site
T30 1109-1121 DNA denotes kappa B site
T31 1170-1180 DNA denotes AP-1 sites
T32 1292-1302 DNA denotes AP-1 sites
T33 1339-1359 DNA denotes LPS response element
T34 1363-1389 cell_line denotes Drosophila Schneider cells
T35 1409-1414 protein denotes c-Fos
T36 1416-1421 protein denotes c-Jun
T37 1423-1428 protein denotes c-Rel
T38 1434-1437 protein denotes p65
T39 1441-1446 protein denotes c-Jun
T40 1451-1454 protein denotes p65
T41 1468-1491 protein denotes transactivation domains
T42 1495-1500 protein denotes c-Jun
T43 1505-1508 protein denotes p65
T44 1536-1541 protein denotes c-Fos
T45 1541-1547 protein denotes /c-Jun
T46 1549-1554 protein denotes c-Rel
T47 1554-1558 protein denotes /p65
T48 1564-1567 protein denotes Sp1
T49 1577-1584 DNA denotes TF gene
T50 1599-1620 cell_type denotes human monocytic cells

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 40-61 NP denotes human monocytic cells
C2 166-195 NP denotes Tissue factor (TF) expression
C3 363-384 NP denotes The human TF promoter
C4 412-469 NP denotes the transcription factors AP-1, c-Rel/p65, Egr-1, and Sp1
C5 610-637 NP denotes these transcription factors
C6 814-832 NP denotes The two AP-1 sites
C7 936-951 NP denotes the TF promoter
C8 961-979 NP denotes the two AP-1 sites
C9 984-1000 NP denotes the kappa B site
C10 1008-1032 NP denotes the LPS response element
C11 1105-1121 NP denotes the kappa B site
C12 1132-1145 NP denotes LPS induction
C13 1162-1180 NP denotes the two AP-1 sites
C14 1228-1241 NP denotes LPS induction
C15 1288-1302 NP denotes the AP-1 sites
C16 1335-1359 NP denotes the LPS response element
C17 1416-1421 NP denotes c-Jun
C18 1434-1437 NP denotes p65
C19 1441-1446 NP denotes c-Jun
C20 1451-1454 NP denotes p65
C21 1495-1500 NP denotes c-Jun
C22 1505-1508 NP denotes p65
C23 1577-1595 NP denotes TF gene expression
C24 1599-1620 NP denotes human monocytic cells
R1 C5 C4 coref-ident these transcription factors,"the transcription factors AP-1, c-Rel/p65, Egr-1, and Sp1"
R2 C7 C3 coref-ident the TF promoter,The human TF promoter
R3 C8 C6 coref-ident the two AP-1 sites,The two AP-1 sites
R4 C11 C9 coref-ident the kappa B site,the kappa B site
R5 C13 C8 coref-ident the two AP-1 sites,the two AP-1 sites
R6 C14 C12 coref-ident LPS induction,LPS induction
R7 C15 C13 coref-ident the AP-1 sites,the two AP-1 sites
R8 C16 C10 coref-ident the LPS response element,the LPS response element
R9 C19 C17 coref-ident c-Jun,c-Jun
R10 C20 C18 coref-ident p65,p65
R11 C21 C19 coref-ident c-Jun,c-Jun
R12 C22 C20 coref-ident p65,p65
R13 C23 C2 coref-ident TF gene expression,Tissue factor (TF) expression
R14 C24 C1 coref-ident human monocytic cells,human monocytic cells

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-62 Sentence denotes Regulation of the tissue factor gene in human monocytic cells.
S2 63-165 Sentence denotes Role of AP-1, NF-kappa B/Rel, and Sp1 proteins in uninduced and lipopolysaccharide-induced expression.
S3 166-275 Sentence denotes Tissue factor (TF) expression by peripheral blood monocytes during sepsis initiates intravascular thrombosis.
S4 276-362 Sentence denotes Bacterial lipopolysaccharide (LPS) rapidly induces TF gene transcription in monocytes.
S5 363-470 Sentence denotes The human TF promoter contains binding sites for the transcription factors AP-1, c-Rel/p65, Egr-1, and Sp1.
S6 471-566 Sentence denotes NF-kappa B/Rel proteins have been shown to physically interact with both AP-1 and Sp1 proteins.
S7 567-717 Sentence denotes In this study, we investigated the role of these transcription factors in uninduced and LPS-induced TF gene expression in human monocytic THP-1 cells.
S8 718-813 Sentence denotes Deletional analysis indicated that five Sp1 sites mediated basal expression in uninduced cells.
S9 814-910 Sentence denotes The two AP-1 sites bound c-Fos/c-Jun heterodimers in both unstimulated and LPS-stimulated cells.
S10 911-1033 Sentence denotes Maximal LPS induction of the TF promoter required the two AP-1 sites and the kappa B site within the LPS response element.
S11 1034-1146 Sentence denotes Disruption of the conserved spacing between the proximal AP-1 site and the kappa B site abolished LPS induction.
S12 1147-1303 Sentence denotes Replacement of the two AP-1 sites with intrinsically bent DNA partially restored LPS induction, suggesting an additional structural role for the AP-1 sites.
S13 1304-1509 Sentence denotes Synergistic transactivation of the LPS response element in Drosophila Schneider cells by coexpression of c-Fos, c-Jun, c-Rel, and p65 or c-Jun and p65 required the transactivation domains of c-Jun and p65.
S14 1510-1621 Sentence denotes These data indicated that c-Fos/c-Jun, c-Rel/p65, and Sp1 regulate TF gene expression in human monocytic cells.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 18-36 DNA_domain_or_region denotes tissue factor gene
T2 40-45 cell_type denotes human
T3 46-61 cell_type denotes monocytic cells
T4 71-75 protein_molecule denotes AP-1
T5 77-91 protein_complex denotes NF-kappa B/Rel
T6 97-100 protein_molecule denotes Sp1
T7 127-145 lipid denotes lipopolysaccharide
T8 166-179 protein_family_or_group denotes Tissue factor
T9 199-225 cell_type denotes peripheral blood monocytes
T10 250-274 other_name denotes intravascular thrombosis
T11 286-304 lipid denotes lipopolysaccharide
T12 306-309 lipid denotes LPS
T13 327-334 DNA_domain_or_region denotes TF gene
T14 352-361 cell_type denotes monocytes
T15 367-384 DNA_domain_or_region denotes human TF promoter
T16 438-442 protein_molecule denotes AP-1
T17 444-453 protein_molecule denotes c-Rel/p65
T18 455-460 protein_molecule denotes Egr-1
T19 466-469 protein_molecule denotes Sp1
T20 471-485 protein_complex denotes NF-kappa B/Rel
T21 616-637 protein_family_or_group denotes transcription factors
T22 655-658 lipid denotes LPS
T23 667-674 DNA_domain_or_region denotes TF gene
T24 689-716 cell_type denotes human monocytic THP-1 cells
T25 758-761 protein_molecule denotes Sp1
T26 797-812 cell_type denotes uninduced cells
T27 822-826 protein_molecule denotes AP-1
T28 839-844 protein_molecule denotes c-Fos
T29 919-922 lipid denotes LPS
T30 940-951 DNA_domain_or_region denotes TF promoter
T31 969-973 protein_molecule denotes AP-1
T32 988-1000 DNA_domain_or_region denotes kappa B site
T33 1012-1015 lipid denotes LPS
T34 1082-1090 DNA_domain_or_region denotes proximal
T35 1091-1095 protein_molecule denotes AP-1
T36 1109-1121 DNA_domain_or_region denotes kappa B site
T37 1132-1135 lipid denotes LPS
T38 1170-1174 protein_molecule denotes AP-1
T39 1228-1231 lipid denotes LPS
T40 1292-1296 protein_molecule denotes AP-1
T41 1304-1331 other_name denotes Synergistic transactivation
T42 1339-1342 lipid denotes LPS
T43 1363-1373 multi_cell denotes Drosophila
T44 1409-1414 protein_molecule denotes c-Fos
T45 1416-1421 protein_molecule denotes c-Jun
T46 1423-1428 protein_molecule denotes c-Rel
T47 1434-1437 protein_molecule denotes p65
T48 1441-1446 protein_molecule denotes c-Jun
T49 1451-1454 protein_molecule denotes p65
T50 1468-1491 protein_domain_or_region denotes transactivation domains
T51 1495-1500 protein_molecule denotes c-Jun
T52 1505-1508 protein_molecule denotes p65
T53 1536-1541 protein_molecule denotes c-Fos
T54 1541-1547 protein_molecule denotes /c-Jun
T55 1549-1554 protein_molecule denotes c-Rel
T56 1554-1558 protein_molecule denotes /p65
T57 1564-1567 protein_molecule denotes Sp1
T58 1577-1584 DNA_domain_or_region denotes TF gene
T59 1599-1604 cell_type denotes human
T60 1605-1620 cell_type denotes monocytic cells