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PubMed:8980514 JSONTXT

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21k_plant_trait_mention

Id Subject Object Predicate Lexical cue
M_0 735-743 funRiceGene:514 denotes glutelin
M_1 1252-1260 funRiceGene:514 denotes glutelin
M_2 421-429 funRiceGene:184 denotes prolamin
M_3 601-609 funRiceGene:184 denotes prolamin
M_4 1239-1247 funRiceGene:184 denotes prolamin
M_5 417-429 xzyao:5663 denotes kDa prolamin
M_6 175-179 PO:0009010, funRiceGene:180 denotes seed
M_7 251-255 PO:0009010, funRiceGene:180 denotes seed
M_8 321-325 PO:0009010, funRiceGene:180 denotes seed
M_9 801-805 PO:0009010, funRiceGene:180 denotes seed
M_10 680-684 hunflair:NA:Gene denotes PG5a
M_11 1308-1329 hunflair:NA:Gene denotes transcription factors
M_12 75-79 hunflair:NA:Species denotes rice
M_13 170-174 hunflair:NA:Species denotes rice
M_14 316-320 hunflair:NA:Species denotes rice
M_15 796-800 hunflair:NA:Species denotes rice
M_16 933-937 hunflair:NA:Species denotes rice
M_17 146-154 hunflair:NA:Gene denotes glutelin
M_18 442-450 hunflair:NA:Gene denotes glutelin
M_19 591-599 hunflair:NA:Gene denotes glutelin
M_20 735-743 hunflair:NA:Gene denotes glutelin
M_21 1252-1260 hunflair:NA:Gene denotes glutelin
M_22 669-678 hunflair:NA:Gene denotes prolamins
M_23 109-116 hunflair:NA:Gene denotes albumin
M_24 405-412 hunflair:NA:Gene denotes albumin
M_25 614-621 hunflair:NA:Gene denotes albumin
M_26 138-154 hunflair:NA:Gene denotes type II glutelin
M_27 434-450 hunflair:NA:Gene denotes type II glutelin
M_28 125-133 hunflair:NA:Gene denotes prolamin
M_29 421-429 hunflair:NA:Gene denotes prolamin
M_30 601-609 hunflair:NA:Gene denotes prolamin
M_31 1239-1247 hunflair:NA:Gene denotes prolamin
M_32 689-693 hunflair:NA:Gene denotes PG5b
M_33 1001-1003 pubtator:MESH:D001172:Disease denotes RA
M_34 1045-1047 pubtator:MESH:D001172:Disease denotes RA
M_35 75-79 pubtator:4530:Species denotes rice
M_36 170-174 pubtator:4530:Species denotes rice
M_37 316-320 pubtator:4530:Species denotes rice
M_38 796-800 pubtator:4530:Species denotes rice
M_39 933-937 pubtator:4530:Species denotes rice

OryzaGP_2021_v2

Id Subject Object Predicate Lexical cue
T1 680-684 http://identifiers.org/oryzabase.gene/9285 denotes PG5a
T2 689-693 http://identifiers.org/oryzabase.gene/14471 denotes PG5b
T3 961-964 http://identifiers.org/oryzabase.gene/2454 denotes gel
T4 1001-1003 http://identifiers.org/oryzabase.gene/2280 denotes RA
T5 1001-1003 http://identifiers.org/oryzabase.gene/2063 denotes RA
T6 1045-1047 http://identifiers.org/oryzabase.gene/2280 denotes RA
T7 1045-1047 http://identifiers.org/oryzabase.gene/2063 denotes RA
T97593 680-684 http://identifiers.org/rapdb.locus/Os05g0329100 denotes PG5a
T62427 689-693 http://identifiers.org/rapdb.locus/Os05g0329400 denotes PG5b
T83968 1001-1003 http://identifiers.org/rapdb.locus/Os04g0557800 denotes RA
T91856 1045-1047 http://identifiers.org/rapdb.locus/Os04g0557800 denotes RA

OryzaGP_2022

Id Subject Object Predicate Lexical cue
T1 125-133 http://identifiers.org/oryzabase.gene/290 denotes prolamin
T2 125-133 http://identifiers.org/oryzabase.gene/13732 denotes prolamin
T3 146-154 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T4 146-154 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T5 421-429 http://identifiers.org/oryzabase.gene/290 denotes prolamin
T6 421-429 http://identifiers.org/oryzabase.gene/13732 denotes prolamin
T7 442-450 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T8 442-450 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T9 591-599 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T10 591-599 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T11 601-609 http://identifiers.org/oryzabase.gene/290 denotes prolamin
T12 601-609 http://identifiers.org/oryzabase.gene/13732 denotes prolamin
T13 735-743 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T14 735-743 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T15 1239-1247 http://identifiers.org/oryzabase.gene/290 denotes prolamin
T16 1239-1247 http://identifiers.org/oryzabase.gene/13732 denotes prolamin
T17 1252-1260 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T18 1252-1260 http://identifiers.org/oryzabase.gene/13733 denotes glutelin

pqqtest_sentence

Id Subject Object Predicate Lexical cue
M_0 1308-1329 cand:funRiceGene:103-transcription factor denotes transcription factors
M_1 1308-1329 cand:funRiceGene:32-transcription regulator denotes transcription factors
M_2 1308-1329 cand:funRiceGene:25-transcription activator denotes transcription factors
M_3 1308-1329 cand:funRiceGene:333-transcription suppressor denotes transcription factors
M_4 1308-1329 cand:funRiceGene:216-transcriptional regulator denotes transcription factors
M_5 1308-1329 cand:funRiceGene:228-transcriptional activator denotes transcription factors
M_6 534-570 cand:funRiceGene:216-transcriptional regulator denotes transcriptional regulatory machinery
M_7 534-570 cand:funRiceGene:32-transcription regulator denotes transcriptional regulatory machinery
M_8 534-570 cand:funRiceGene:333-transcription suppressor denotes transcriptional regulatory machinery
M_9 534-570 cand:funRiceGene:25-transcription activator denotes transcriptional regulatory machinery
M_10 534-570 cand:funRiceGene:103-transcription factor denotes transcriptional regulatory machinery
M_11 534-570 cand:funRiceGene:228-transcriptional activator denotes transcriptional regulatory machinery
M_12 1252-1260 GeneID:RAPID:Os02g0456100MSUID:LOC_Os02g25860 denotes glutelin
M_13 591-599 GeneID:RAPID:Os02g0456100MSUID:LOC_Os02g25860 denotes glutelin
T53533 1308-1329 xzyao:35061 denotes transcription factors
T90805 984-993 xzyao:11711 denotes 5' region
T74112 251-266 TO:0002661 denotes seed maturation
T73575 85-100 xzyao:25000 denotes storage protein
T81207 326-341 xzyao:25000 denotes storage protein
T75285 1028-1041 xzyao:41600 denotes DNA sequences
T23451 1135-1148 xzyao:41600 denotes DNA sequences
T95025 375-390 xzyao:25000 denotes storage protein
T51614 806-821 xzyao:25000 denotes storage protein
T98528 125-133 funRiceGene:184 denotes prolamin
T29484 421-429 funRiceGene:184 denotes prolamin
T70906 601-609 funRiceGene:184 denotes prolamin
T35426 1239-1247 funRiceGene:184 denotes prolamin
T99390 80-84 PO:0009010, funRiceGene:180 denotes seed
M_14 175-179 PO:0009010, funRiceGene:180 denotes seed
M_15 251-255 PO:0009010, funRiceGene:180 denotes seed
M_16 321-325 PO:0009010, funRiceGene:180 denotes seed
M_17 801-805 PO:0009010, funRiceGene:180 denotes seed
M_18 109-116 funRiceGene:174 denotes albumin
M_19 405-412 funRiceGene:174 denotes albumin
M_20 614-621 funRiceGene:174 denotes albumin
M_21 80-100 xzyao:36345 denotes seed storage protein
M_22 321-341 xzyao:36345 denotes seed storage protein
M_23 801-821 xzyao:36345 denotes seed storage protein
M_24 235-247 xzyao:2384 denotes short period
M_25 75-84 xzyao:29448 denotes rice seed
M_26 170-179 xzyao:29448 denotes rice seed
M_27 316-325 xzyao:29448 denotes rice seed
M_28 796-805 xzyao:29448 denotes rice seed
M_29 146-154 funRiceGene:514 denotes glutelin
M_30 442-450 funRiceGene:514 denotes glutelin
M_31 591-599 funRiceGene:514 denotes glutelin
M_32 735-743 funRiceGene:514 denotes glutelin
M_33 1252-1260 funRiceGene:514 denotes glutelin
M_34 75-100 xzyao:15482 denotes rice seed storage protein
M_35 316-341 xzyao:15482 denotes rice seed storage protein
M_36 796-821 xzyao:15482 denotes rice seed storage protein
M_37 933-943 xzyao:5497 denotes rice seeds
M_38 121-133 xzyao:8818 denotes kDa prolamin
M_39 417-429 xzyao:8818 denotes kDa prolamin
M_40 1308-1329 hunflair:NA:Gene denotes transcription factors
M_41 689-693 hunflair:NA:Gene denotes PG5b
M_42 125-133 hunflair:NA:Gene denotes prolamin
M_43 421-429 hunflair:NA:Gene denotes prolamin
M_44 601-609 hunflair:NA:Gene denotes prolamin
M_45 1239-1247 hunflair:NA:Gene denotes prolamin
M_46 669-678 hunflair:NA:Gene denotes prolamins
M_47 680-684 hunflair:NA:Gene denotes PG5a
M_48 146-154 hunflair:NA:Gene denotes glutelin
M_49 442-450 hunflair:NA:Gene denotes glutelin
M_50 591-599 hunflair:NA:Gene denotes glutelin
M_51 735-743 hunflair:NA:Gene denotes glutelin
M_52 1252-1260 hunflair:NA:Gene denotes glutelin
M_53 109-116 hunflair:NA:Gene denotes albumin
M_54 405-412 hunflair:NA:Gene denotes albumin
M_55 614-621 hunflair:NA:Gene denotes albumin
M_56 75-79 hunflair:NA:Species denotes rice
M_57 170-174 hunflair:NA:Species denotes rice
M_58 316-320 hunflair:NA:Species denotes rice
M_59 796-800 hunflair:NA:Species denotes rice
M_60 933-937 hunflair:NA:Species denotes rice
M_61 138-154 hunflair:NA:Gene denotes type II glutelin
M_62 434-450 hunflair:NA:Gene denotes type II glutelin
M_63 1001-1003 pubtator:MESH:D001172:Disease denotes RA
M_64 1045-1047 pubtator:MESH:D001172:Disease denotes RA
M_65 75-79 pubtator:4530:Species denotes rice
M_66 170-174 pubtator:4530:Species denotes rice
M_67 316-320 pubtator:4530:Species denotes rice
M_68 796-800 pubtator:4530:Species denotes rice
M_69 933-937 pubtator:4530:Species denotes rice

OryzaGP_2021_FLAIR

Id Subject Object Predicate Lexical cue
M_0 125-133 hunflair:NA:Gene denotes prolamin
M_1 421-429 hunflair:NA:Gene denotes prolamin
M_2 601-609 hunflair:NA:Gene denotes prolamin
M_3 1239-1247 hunflair:NA:Gene denotes prolamin
M_4 1308-1329 hunflair:NA:Gene denotes transcription factors
M_5 689-693 hunflair:NA:Gene denotes PG5b
M_6 138-154 hunflair:NA:Gene denotes type II glutelin
M_7 434-450 hunflair:NA:Gene denotes type II glutelin
M_8 669-678 hunflair:NA:Gene denotes prolamins
M_9 109-116 hunflair:NA:Gene denotes albumin
M_10 405-412 hunflair:NA:Gene denotes albumin
M_11 614-621 hunflair:NA:Gene denotes albumin
M_12 75-79 hunflair:NA:Species denotes rice
M_13 170-174 hunflair:NA:Species denotes rice
M_14 316-320 hunflair:NA:Species denotes rice
M_15 796-800 hunflair:NA:Species denotes rice
M_16 933-937 hunflair:NA:Species denotes rice
M_17 680-684 hunflair:NA:Gene denotes PG5a
M_18 146-154 hunflair:NA:Gene denotes glutelin
M_19 442-450 hunflair:NA:Gene denotes glutelin
M_20 591-599 hunflair:NA:Gene denotes glutelin
M_21 735-743 hunflair:NA:Gene denotes glutelin
M_22 1252-1260 hunflair:NA:Gene denotes glutelin

OryzaGP_2021

Id Subject Object Predicate Lexical cue
T1 102-116 http://identifiers.org/oryzabase.gene/9288 denotes 16 kDa albumin
T2 118-133 http://identifiers.org/oryzabase.gene/13761 denotes 13 kDa prolamin
T3 146-154 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T4 146-154 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T5 398-412 http://identifiers.org/oryzabase.gene/9288 denotes 16 kDa albumin
T6 414-429 http://identifiers.org/oryzabase.gene/13761 denotes 13 kDa prolamin
T7 442-450 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T8 442-450 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T9 591-599 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T10 591-599 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T11 601-609 http://identifiers.org/oryzabase.gene/290 denotes prolamin
T12 601-609 http://identifiers.org/oryzabase.gene/13761 denotes prolamin
T13 601-609 http://identifiers.org/oryzabase.gene/13732 denotes prolamin
T14 680-684 http://identifiers.org/oryzabase.gene/9285 denotes PG5a
T15 689-693 http://identifiers.org/oryzabase.gene/14471 denotes PG5b
T16 735-743 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T17 735-743 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T18 961-964 http://identifiers.org/oryzabase.gene/2454 denotes gel
T19 1001-1003 http://identifiers.org/oryzabase.gene/2280 denotes RA
T20 1001-1003 http://identifiers.org/oryzabase.gene/2063 denotes RA
T21 1045-1047 http://identifiers.org/oryzabase.gene/2280 denotes RA
T22 1045-1047 http://identifiers.org/oryzabase.gene/2063 denotes RA
T23 1239-1247 http://identifiers.org/oryzabase.gene/290 denotes prolamin
T24 1239-1247 http://identifiers.org/oryzabase.gene/13761 denotes prolamin
T25 1239-1247 http://identifiers.org/oryzabase.gene/13732 denotes prolamin
T26 1252-1260 http://identifiers.org/oryzabase.gene/22725 denotes glutelin
T27 1252-1260 http://identifiers.org/oryzabase.gene/13733 denotes glutelin
T94675 102-116 http://identifiers.org/ricegap/LOC_Os07g11360 denotes 16 kDa albumin
T95515 118-133 http://identifiers.org/ricegap/LOC_Os07g10570 denotes 13 kDa prolamin
T48500 146-154 http://identifiers.org/ricegap/LOC_Os02g25860 denotes glutelin
T26060 398-412 http://identifiers.org/ricegap/LOC_Os07g11360 denotes 16 kDa albumin
T13462 414-429 http://identifiers.org/ricegap/LOC_Os07g10570 denotes 13 kDa prolamin
T28644 442-450 http://identifiers.org/ricegap/LOC_Os02g25860 denotes glutelin
T4984 591-599 http://identifiers.org/ricegap/LOC_Os02g25860 denotes glutelin
T7240 601-609 http://identifiers.org/ricegap/LOC_Os07g10570 denotes prolamin
T98433 669-678 http://identifiers.org/ricegap/LOC_Os07g10570 denotes prolamins
T36248 680-684 http://identifiers.org/ricegap/LOC_Os05g26386 denotes PG5a
T70855 680-684 http://identifiers.org/ricegap/LOC_Os05g26377 denotes PG5a
T55807 689-693 http://identifiers.org/ricegap/LOC_Os05g26440 denotes PG5b
T16237 735-743 http://identifiers.org/ricegap/LOC_Os02g25860 denotes glutelin
T41323 1001-1003 http://identifiers.org/ricegap/LOC_Os04g47080 denotes RA
T27439 1045-1047 http://identifiers.org/ricegap/LOC_Os04g47080 denotes RA
T43095 1094-1110 http://identifiers.org/ricegap/LOC_Os02g02410 denotes binding proteins
T41947 1157-1173 http://identifiers.org/ricegap/LOC_Os02g02410 denotes binding proteins
T57511 1239-1247 http://identifiers.org/ricegap/LOC_Os07g10570 denotes prolamin
T82030 1252-1260 http://identifiers.org/ricegap/LOC_Os02g25860 denotes glutelin
T50702 102-116 http://identifiers.org/rapdb.locus/Os07g0214100 denotes 16 kDa albumin
T2726 118-133 http://identifiers.org/rapdb.locus/Os07g0206400 denotes 13 kDa prolamin
T98448 146-154 http://identifiers.org/rapdb.locus/Os02g0456100 denotes glutelin
T63963 398-412 http://identifiers.org/rapdb.locus/Os07g0214100 denotes 16 kDa albumin
T68025 414-429 http://identifiers.org/rapdb.locus/Os07g0206400 denotes 13 kDa prolamin
T98914 442-450 http://identifiers.org/rapdb.locus/Os02g0456100 denotes glutelin
T69158 591-599 http://identifiers.org/rapdb.locus/Os02g0456100 denotes glutelin
T41132 601-609 http://identifiers.org/rapdb.locus/Os07g0206400 denotes prolamin
T5155 669-678 http://identifiers.org/rapdb.locus/Os07g0206400 denotes prolamins
T17857 680-684 http://identifiers.org/rapdb.locus/Os05g0329100 denotes PG5a
T56435 689-693 http://identifiers.org/rapdb.locus/Os05g0329400 denotes PG5b
T84397 735-743 http://identifiers.org/rapdb.locus/Os02g0456100 denotes glutelin
T86709 1001-1003 http://identifiers.org/rapdb.locus/Os04g0557800 denotes RA
T72183 1045-1047 http://identifiers.org/rapdb.locus/Os04g0557800 denotes RA
T7677 1094-1110 http://identifiers.org/rapdb.locus/Os02g0115900 denotes binding proteins
T66783 1157-1173 http://identifiers.org/rapdb.locus/Os02g0115900 denotes binding proteins
T71200 1239-1247 http://identifiers.org/rapdb.locus/Os07g0206400 denotes prolamin
T58394 1252-1260 http://identifiers.org/rapdb.locus/Os02g0456100 denotes glutelin
T96946 102-116 http://identifiers.org/uniprot/Q01883 denotes 16 kDa albumin
T83962 118-133 http://identifiers.org/uniprot/P17048 denotes 13 kDa prolamin
T48961 146-154 http://identifiers.org/uniprot/Q9ZWJ8 denotes glutelin
T94315 398-412 http://identifiers.org/uniprot/Q01883 denotes 16 kDa albumin
T86522 414-429 http://identifiers.org/uniprot/P17048 denotes 13 kDa prolamin
T65781 442-450 http://identifiers.org/uniprot/Q9ZWJ8 denotes glutelin
T92813 591-599 http://identifiers.org/uniprot/Q9ZWJ8 denotes glutelin
T46769 601-609 http://identifiers.org/uniprot/P17048 denotes prolamin
T21141 680-684 http://identifiers.org/uniprot/Q5EFA4 denotes PG5a
T42404 689-693 http://identifiers.org/uniprot/Q5EFA4 denotes PG5b
T76990 735-743 http://identifiers.org/uniprot/Q9ZWJ8 denotes glutelin
T82382 1001-1003 http://identifiers.org/uniprot/Q948Y3 denotes RA
T30006 1045-1047 http://identifiers.org/uniprot/Q948Y3 denotes RA
T26899 1239-1247 http://identifiers.org/uniprot/P17048 denotes prolamin
T44855 1252-1260 http://identifiers.org/uniprot/Q9ZWJ8 denotes glutelin
M_0 125-133 hunflair:NA:Gene denotes prolamin
M_1 421-429 hunflair:NA:Gene denotes prolamin
M_2 601-609 hunflair:NA:Gene denotes prolamin
M_3 1239-1247 hunflair:NA:Gene denotes prolamin
M_4 1308-1329 hunflair:NA:Gene denotes transcription factors
M_5 689-693 hunflair:NA:Gene denotes PG5b
M_6 138-154 hunflair:NA:Gene denotes type II glutelin
M_7 434-450 hunflair:NA:Gene denotes type II glutelin
M_8 669-678 hunflair:NA:Gene denotes prolamins
M_9 109-116 hunflair:NA:Gene denotes albumin
M_10 405-412 hunflair:NA:Gene denotes albumin
M_11 614-621 hunflair:NA:Gene denotes albumin
M_12 75-79 hunflair:NA:Species denotes rice
M_13 170-174 hunflair:NA:Species denotes rice
M_14 316-320 hunflair:NA:Species denotes rice
M_15 796-800 hunflair:NA:Species denotes rice
M_16 933-937 hunflair:NA:Species denotes rice
M_17 680-684 hunflair:NA:Gene denotes PG5a
M_18 146-154 hunflair:NA:Gene denotes glutelin
M_19 442-450 hunflair:NA:Gene denotes glutelin
M_20 591-599 hunflair:NA:Gene denotes glutelin
M_21 735-743 hunflair:NA:Gene denotes glutelin
M_22 1252-1260 hunflair:NA:Gene denotes glutelin

funRiceGenes-all

Id Subject Object Predicate Lexical cue
PTO-all_T1 251-266 http://purl.obolibrary.org/obo/TO_0002661 denotes seed maturation

funRiceGenes-exact

Id Subject Object Predicate Lexical cue
PTO-exact_T1 251-266 http://purl.obolibrary.org/obo/TO_0002661 denotes seed maturation

Oryza_sentences

Id Subject Object Predicate Lexical cue
T1 0-101 Sentence denotes The same nuclear proteins bind to the 5'-flanking regions of genes for the rice seed storage protein:
T2 102-155 Sentence denotes 16 kDa albumin, 13 kDa prolamin and type II glutelin.
T3 156-267 Sentence denotes Expression of rice seed storage-protein genes is dramatically regulated over a short period of seed maturation.
T4 268-487 Sentence denotes To characterize the expression mechanism of the rice seed storage protein genes, their expression of major storage protein genes (16 kDa albumin, 13 kDa prolamin and type II glutelin) were compared by RNA blot analysis.
T5 488-628 Sentence denotes Their coordinate expression suggests that the transcriptional regulatory machinery is shared among the glutelin, prolamin and albumin-genes.
T6 629-756 Sentence denotes We isolated two novel genomic genes for prolamins (PG5a and PG5b) and obtained the promoter region of the glutelin gene by PCR.
T7 757-883 Sentence denotes The 5'-flanking regions of these three rice seed storage protein genes were found to contain some similar conserved sequences.
T8 884-1009 Sentence denotes Nuclear extract partially purified from maturing rice seeds was used for the gel shift assay of the 5' region of the RA gene.
T9 1010-1111 Sentence denotes We identified two DNA sequences of RA gene which were recognized by independent DNA-binding proteins.
T10 1112-1330 Sentence denotes The complexes of these DNA sequences and DNA-binding proteins were inhibited by the fragments containing the 5' regions of the prolamin and glutelin genes, suggesting that these three genes share transcription factors.