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Inflammaging

Id Subject Object Predicate Lexical cue
T1 0-77 Sentence denotes A model of latent adenovirus 5 infection in the guinea pig (Cavia porcellus).
T2 78-226 Sentence denotes A model of adenovirus 5 (Ad5) infection was developed in guinea pigs to begin to study its role in the pathogenesis of peripheral lung inflammation.
T3 227-374 Sentence denotes Forty animals were inoculated intranasally with 10(7.0) pfu of Ad5/animal, and 15 animals inoculated with sterile culture media served as controls.
T4 375-497 Sentence denotes Viral titres were 10(4.4), 10(6.1), 10(5.2), and 10(2.9) pfu/animal, on days 1, 3, 4, and 7 after infection, respectively.
T5 498-637 Sentence denotes In situ hybridization to viral DNA and immunocytochemistry for Ad5 E1A protein localized the virus to airway and alveolar epithelial cells.
T6 638-843 Sentence denotes Histologic examination showed an extensive inflammatory cell infiltration around the airways, with epithelial necrosis and an alveolar exudate that caused localized alveolar collapse in the infected areas.
T7 844-924 Sentence denotes Immunocytochemistry identified the cells in the infiltrate as cytotoxic T cells.
T8 925-1096 Sentence denotes Although all animals 20 and 47 days after infection had seroconverted to Ad5, virus was not detected in these groups either by viral plaque assay or in situ hybridization.
T9 1097-1250 Sentence denotes Ad5 E1A DNA was detected by polymerase chain reaction in five of six animals 20 days after infection and in five of five animals 47 days after infection.
T10 1251-1480 Sentence denotes In these same animals, E1A protein was detected 20 days after infection in two and 47 days after infection in one while persistent bronchiolitis was observed in four and three animals 20 and 47 days after infection, respectively.
T11 1481-1617 Sentence denotes These results demonstrate that the guinea pig provides a useful model to study the role of Ad5 infection in chronic airway inflammation.
T1 0-77 Sentence denotes A model of latent adenovirus 5 infection in the guinea pig (Cavia porcellus).
T2 78-226 Sentence denotes A model of adenovirus 5 (Ad5) infection was developed in guinea pigs to begin to study its role in the pathogenesis of peripheral lung inflammation.
T3 227-374 Sentence denotes Forty animals were inoculated intranasally with 10(7.0) pfu of Ad5/animal, and 15 animals inoculated with sterile culture media served as controls.
T4 375-497 Sentence denotes Viral titres were 10(4.4), 10(6.1), 10(5.2), and 10(2.9) pfu/animal, on days 1, 3, 4, and 7 after infection, respectively.
T5 498-637 Sentence denotes In situ hybridization to viral DNA and immunocytochemistry for Ad5 E1A protein localized the virus to airway and alveolar epithelial cells.
T6 638-843 Sentence denotes Histologic examination showed an extensive inflammatory cell infiltration around the airways, with epithelial necrosis and an alveolar exudate that caused localized alveolar collapse in the infected areas.
T7 844-924 Sentence denotes Immunocytochemistry identified the cells in the infiltrate as cytotoxic T cells.
T8 925-1096 Sentence denotes Although all animals 20 and 47 days after infection had seroconverted to Ad5, virus was not detected in these groups either by viral plaque assay or in situ hybridization.
T9 1097-1250 Sentence denotes Ad5 E1A DNA was detected by polymerase chain reaction in five of six animals 20 days after infection and in five of five animals 47 days after infection.
T10 1251-1480 Sentence denotes In these same animals, E1A protein was detected 20 days after infection in two and 47 days after infection in one while persistent bronchiolitis was observed in four and three animals 20 and 47 days after infection, respectively.
T11 1481-1617 Sentence denotes These results demonstrate that the guinea pig provides a useful model to study the role of Ad5 infection in chronic airway inflammation.

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 523-532 DNA denotes viral DNA
T2 565-576 protein denotes E1A protein
T3 611-636 cell_type denotes alveolar epithelial cells
T4 906-923 cell_type denotes cytotoxic T cells
T5 1097-1108 DNA denotes Ad5 E1A DNA
T6 1274-1285 protein denotes E1A protein

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-77 Sentence denotes A model of latent adenovirus 5 infection in the guinea pig (Cavia porcellus).
S2 78-226 Sentence denotes A model of adenovirus 5 (Ad5) infection was developed in guinea pigs to begin to study its role in the pathogenesis of peripheral lung inflammation.
S3 227-374 Sentence denotes Forty animals were inoculated intranasally with 10(7.0) pfu of Ad5/animal, and 15 animals inoculated with sterile culture media served as controls.
S4 375-497 Sentence denotes Viral titres were 10(4.4), 10(6.1), 10(5.2), and 10(2.9) pfu/animal, on days 1, 3, 4, and 7 after infection, respectively.
S5 498-637 Sentence denotes In situ hybridization to viral DNA and immunocytochemistry for Ad5 E1A protein localized the virus to airway and alveolar epithelial cells.
S6 638-843 Sentence denotes Histologic examination showed an extensive inflammatory cell infiltration around the airways, with epithelial necrosis and an alveolar exudate that caused localized alveolar collapse in the infected areas.
S7 844-924 Sentence denotes Immunocytochemistry identified the cells in the infiltrate as cytotoxic T cells.
S8 925-1096 Sentence denotes Although all animals 20 and 47 days after infection had seroconverted to Ad5, virus was not detected in these groups either by viral plaque assay or in situ hybridization.
S9 1097-1250 Sentence denotes Ad5 E1A DNA was detected by polymerase chain reaction in five of six animals 20 days after infection and in five of five animals 47 days after infection.
S10 1251-1480 Sentence denotes In these same animals, E1A protein was detected 20 days after infection in two and 47 days after infection in one while persistent bronchiolitis was observed in four and three animals 20 and 47 days after infection, respectively.
S11 1481-1617 Sentence denotes These results demonstrate that the guinea pig provides a useful model to study the role of Ad5 infection in chronic airway inflammation.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 11-40 NP denotes latent adenovirus 5 infection
C3 44-76 NP denotes the guinea pig (Cavia porcellus)
C1 0-76 NP denotes A model of latent adenovirus 5 infection in the guinea pig (Cavia porcellus)
C5 89-117 NP denotes adenovirus 5 (Ad5) infection
C4 78-117 NP denotes A model of adenovirus 5 (Ad5) infection
C6 165-168 NP denotes its
C7 537-556 NP denotes immunocytochemistry
C8 600-606 NP denotes airway
C9 719-730 NP denotes the airways
C10 761-780 NP denotes an alveolar exudate
C11 781-785 NP denotes that
C12 844-863 NP denotes Immunocytochemistry
C13 1512-1526 NP denotes the guinea pig
C14 1572-1585 NP denotes Ad5 infection
R1 C5 C2 coref-ident adenovirus 5 (Ad5) infection,latent adenovirus 5 infection
R2 C4 C1 coref-pron A model of adenovirus 5 (Ad5) infection,A model of latent adenovirus 5 infection in the guinea pig (Cavia porcellus)
R3 C9 C8 coref-ident the airways,airway
R4 C11 C10 coref-relat that,an alveolar exudate
R5 C12 C7 coref-ident Immunocytochemistry,immunocytochemistry
R6 C13 C3 coref-ident the guinea pig,the guinea pig (Cavia porcellus)
R7 C14 C5 coref-ident Ad5 infection,adenovirus 5 (Ad5) infection

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 18-30 virus denotes adenovirus 5
T2 48-58 multi_cell denotes guinea pig
T3 89-101 virus denotes adenovirus 5
T4 103-106 virus denotes Ad5
T5 135-146 multi_cell denotes guinea pigs
T6 197-225 other_name denotes peripheral lung inflammation
T7 233-240 multi_cell denotes animals
T8 290-293 virus denotes Ad5
T9 309-316 multi_cell denotes animals
T10 333-354 other_organic_compound denotes sterile culture media
T11 498-519 other_name denotes In situ hybridization
T12 523-532 DNA_family_or_group denotes viral DNA
T13 537-556 other_name denotes immunocytochemistry
T14 561-564 virus denotes Ad5
T15 565-576 protein_molecule denotes E1A protein
T16 611-636 cell_type denotes alveolar epithelial cells
T17 681-711 other_name denotes inflammatory cell infiltration
T18 737-756 other_name denotes epithelial necrosis
T19 764-780 other_organic_compound denotes alveolar exudate
T20 793-820 other_name denotes localized alveolar collapse
T21 828-842 other_name denotes infected areas
T22 844-863 other_name denotes Immunocytochemistry
T23 906-923 cell_type denotes cytotoxic T cells
T24 938-945 multi_cell denotes animals
T25 967-976 other_name denotes infection
T26 998-1001 virus denotes Ad5
T27 1052-1070 other_name denotes viral plaque assay
T28 1074-1095 other_name denotes in situ hybridization
T29 1097-1100 virus denotes Ad5
T30 1166-1173 multi_cell denotes animals
T31 1218-1225 multi_cell denotes animals
T32 1265-1272 multi_cell denotes animals
T33 1274-1285 protein_molecule denotes E1A protein
T34 1382-1395 other_name denotes bronchiolitis
T35 1427-1434 multi_cell denotes animals
T36 1456-1465 other_name denotes infection
T37 1516-1526 multi_cell denotes guinea pig
T38 1572-1585 other_name denotes Ad5 infection
T39 1589-1616 other_name denotes chronic airway inflammation