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PubMed:8780747 JSONTXT

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DisGeNET

Id Subject Object Predicate Lexical cue
T0 120-124 gene:604 denotes BCL6
T1 91-99 disease:C0024299 denotes lymphoma
R1 T0 T1 associated_with BCL6,lymphoma

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 0-29 DNA denotes Translocation (3;14)(q27;q11)
T2 120-124 DNA denotes BCL6
T3 215-231 DNA denotes t(3;14)(q27;q11)
T4 236-240 DNA denotes BCL6
T5 262-276 cell_type denotes affected cells
T6 353-367 cell_type denotes lymphoma cells
T7 541-557 DNA denotes t(3;14)(q27;q11)
T8 599-616 DNA denotes t(3;14) (q27;q32)
T9 665-669 DNA denotes BCL6
T10 671-673 DNA denotes JH
T11 679-687 DNA denotes TCR beta
T12 699-708 DNA denotes TCR delta
T13 710-722 DNA denotes Cosmid probe
T14 726-730 DNA denotes BCL6
T15 745-750 DNA denotes 14q11
T16 755-759 DNA denotes 3q27
T17 819-829 DNA denotes band 14q11
T18 844-883 protein denotes T-cell receptor alpha- and delta-chains
T19 885-900 protein denotes TCR alpha/delta
T20 903-917 cell_type denotes lymphoma cells
T21 928-950 cell_type denotes B-cell, IgGk phenotype
T22 980-1000 DNA denotes novel proto-oncogene
T23 1020-1035 DNA denotes TCR alpha/delta

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
8780747-0#120#124#gene604 120-124 gene604 denotes BCL6
8780747-0#77#99#diseaseC0024305 77-99 diseaseC0024305 denotes non-Hodgkin's lymphoma
120#124#gene60477#99#diseaseC0024305 8780747-0#120#124#gene604 8780747-0#77#99#diseaseC0024305 associated_with BCL6,non-Hodgkin's lymphoma

genia-medco-coref

Id Subject Object Predicate Lexical cue
C7 0-29 NP denotes Translocation (3;14)(q27;q11)
C4 120-138 NP denotes BCL6 rearrangement
C1 62-138 NP denotes a patient with non-Hodgkin's lymphoma of B-cell type with BCL6 rearrangement
C8 31-138 NP denotes a new variant translocation in a patient with non-Hodgkin's lymphoma of B-cell type with BCL6 rearrangement
C10 213-231 NP denotes a t(3;14)(q27;q11)
C5 236-276 NP denotes BCL6 rearrangement in the affected cells
C2 150-276 NP denotes a 65-year-old woman with non-Hodgkin's lymphoma (NHL) carrying a t(3;14)(q27;q11) and BCL6 rearrangement in the affected cells
C3 278-281 NP denotes She
C6 539-557 NP denotes a t(3;14)(q27;q11)
C9 559-564 NP denotes which
C13 568-616 NP denotes a new variant translocation of t(3;14) (q27;q32)
C12 648-669 NP denotes rearrangement of BCL6
C14 1051-1069 NP denotes this translocation
R1 C8 C7 coref-appos a new variant translocation in a patient with non-Hodgkin's lymphoma of B-cell type with BCL6 rearrangement,Translocation (3;14)(q27;q11)
R2 C10 C7 coref-ident a t(3;14)(q27;q11),Translocation (3;14)(q27;q11)
R3 C5 C4 coref-ident BCL6 rearrangement in the affected cells,BCL6 rearrangement
R4 C2 C1 coref-ident a 65-year-old woman with non-Hodgkin's lymphoma (NHL) carrying a t(3;14)(q27;q11) and BCL6 rearrangement in the affected cells,a patient with non-Hodgkin's lymphoma of B-cell type with BCL6 rearrangement
R5 C3 C2 coref-pron She,a 65-year-old woman with non-Hodgkin's lymphoma (NHL) carrying a t(3;14)(q27;q11) and BCL6 rearrangement in the affected cells
R6 C6 C10 coref-xxx a t(3;14)(q27;q11),a t(3;14)(q27;q11)
R7 C9 C6 coref-relat which,a t(3;14)(q27;q11)
R8 C12 C5 coref-ident rearrangement of BCL6,BCL6 rearrangement in the affected cells
R9 C14 C13 coref-ident this translocation,a new variant translocation of t(3;14) (q27;q32)

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-139 Sentence denotes Translocation (3;14)(q27;q11): a new variant translocation in a patient with non-Hodgkin's lymphoma of B-cell type with BCL6 rearrangement.
S2 140-277 Sentence denotes We report a 65-year-old woman with non-Hodgkin's lymphoma (NHL) carrying a t(3;14)(q27;q11) and BCL6 rearrangement in the affected cells.
S3 278-384 Sentence denotes She had generalized lymphadenopathy and the bone marrow was infiltrated by lymphoma cells at presentation.
S4 385-509 Sentence denotes Histological diagnosis was "malignant lymphoma, diffuse, large cell" type according to an International Working Formulation.
S5 510-617 Sentence denotes Chromosome analysis revealed a t(3;14)(q27;q11), which is a new variant translocation of t(3;14) (q27;q32).
S6 618-709 Sentence denotes Southern blot analysis showed rearrangement of BCL6, JH, and TCR beta but not of TCR delta.
S7 710-805 Sentence denotes Cosmid probe of BCL6 hybridized to 14q11 and 3q27 by fluorescence in situ hybridization (FISH).
S8 806-951 Sentence denotes Although the band 14q11 is a locus of T-cell receptor alpha- and delta-chains (TCR alpha/delta), lymphoma cells expressed B-cell, IgGk phenotype.
S9 952-1070 Sentence denotes The findings suggest that a novel proto-oncogene in the vicinity of TCR alpha/delta is involved in this translocation.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-29 DNA_domain_or_region denotes Translocation (3;14)(q27;q11)
T2 37-58 other_name denotes variant translocation
T3 64-71 multi_cell denotes patient
T4 77-99 other_name denotes non-Hodgkin's lymphoma
T5 120-124 DNA_domain_or_region denotes BCL6
T6 175-197 other_name denotes non-Hodgkin's lymphoma
T7 199-202 other_name denotes NHL
T8 215-231 DNA_domain_or_region denotes t(3;14)(q27;q11)
T9 236-240 DNA_domain_or_region denotes BCL6
T10 262-276 cell_type denotes affected cells
T11 286-313 other_name denotes generalized lymphadenopathy
T12 322-333 tissue denotes bone marrow
T13 353-367 cell_type denotes lymphoma cells
T14 385-407 other_name denotes Histological diagnosis
T15 413-458 other_name denotes malignant lymphoma, diffuse, large cell" type
T16 475-508 other_name denotes International Working Formulation
T17 510-529 other_name denotes Chromosome analysis
T18 541-557 DNA_domain_or_region denotes t(3;14)(q27;q11)
T19 574-595 other_name denotes variant translocation
T20 599-616 DNA_domain_or_region denotes t(3;14) (q27;q32)
T21 665-669 DNA_domain_or_region denotes BCL6
T22 671-673 DNA_domain_or_region denotes JH
T23 679-687 DNA_domain_or_region denotes TCR beta
T24 699-708 DNA_domain_or_region denotes TCR delta
T25 710-722 DNA_molecule denotes Cosmid probe
T26 726-730 DNA_domain_or_region denotes BCL6
T27 745-750 DNA_domain_or_region denotes 14q11
T28 755-759 DNA_domain_or_region denotes 3q27
T29 763-797 other_name denotes fluorescence in situ hybridization
T30 799-803 other_name denotes FISH
T31 819-829 DNA_domain_or_region denotes band 14q11
T32 885-900 protein_subunit denotes TCR alpha/delta
T33 903-917 cell_type denotes lymphoma cells
T34 928-950 cell_type denotes B-cell, IgGk phenotype
T35 980-1000 DNA_domain_or_region denotes novel proto-oncogene
T36 1020-1035 DNA_domain_or_region denotes TCR alpha/delta
T37 1056-1069 other_name denotes translocation

PubCasesHPO

Id Subject Object Predicate Lexical cue
AB1 189-197 HP:0002665 denotes lymphoma
TI1 91-99 HP:0002665 denotes lymphoma
AB2 286-313 HP:0008940 denotes generalized lymphadenopathy
AB3 353-361 HP:0002665 denotes lymphoma
AB4 423-431 HP:0002665 denotes lymphoma
AB5 903-911 HP:0002665 denotes lymphoma