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PubMed:8728694 JSONTXT

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jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 80-107 DNA denotes balanced X;17 translocation
T2 293-330 DNA denotes balanced whole arm X;17 translocation
T3 403-404 DNA denotes X
T4 574-575 DNA denotes X
T5 643-668 DNA denotes X;autosome translocations
T6 758-759 DNA denotes X
T7 764-766 DNA denotes 17
T8 803-814 DNA denotes chromosomes
T9 951-965 DNA denotes chromosome 17p
T10 1122-1124 DNA denotes Xp
T11 1184-1196 DNA denotes X chromosome

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 0-23 NP denotes X inactivation analysis
C3 27-107 NP denotes a female with hypomelanosis of Ito associated with a balanced X;17 translocation
C9 143-145 NP denotes Xp
C2 147-170 NP denotes X inactivation analysis
C5 188-225 NP denotes normal and hypopigmented skin samples
C4 240-330 NP denotes a female with hypomelanosis of Ito associated with a balanced whole arm X;17 translocation
C6 440-458 NP denotes both types of skin
C7 503-521 NP denotes hypopigmented skin
C8 1021-1033 NP denotes this patient
C10 1122-1124 NP denotes Xp
C11 1109-1141 NP denotes sequences on Xp in cell lineages
C12 1142-1146 NP denotes that
R1 C2 C1 coref-ident X inactivation analysis,X inactivation analysis
R2 C4 C3 coref-ident a female with hypomelanosis of Ito associated with a balanced whole arm X;17 translocation,a female with hypomelanosis of Ito associated with a balanced X;17 translocation
R3 C6 C5 coref-ident both types of skin,normal and hypopigmented skin samples
R4 C7 C6 coref-part-whole hypopigmented skin,both types of skin
R5 C8 C4 coref-ident this patient,a female with hypomelanosis of Ito associated with a balanced whole arm X;17 translocation
R6 C10 C9 coref-ident Xp,Xp
R7 C12 C11 coref-relat that,sequences on Xp in cell lineages

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-146 Sentence denotes X inactivation analysis in a female with hypomelanosis of Ito associated with a balanced X;17 translocation: evidence for functional disomy of Xp.
S2 147-331 Sentence denotes X inactivation analysis was performed on normal and hypopigmented skin samples obtained from a female with hypomelanosis of Ito associated with a balanced whole arm X;17 translocation.
S3 332-669 Sentence denotes Severe skewing of X inactivation resulting in inactivity of the intact X was found in blood and cultures of both types of skin, but analysis of DNA prepared directly from hypopigmented skin showed significant inactivation of the translocated X, inconsistent with the usual mechanism of phenotypic expression in X;autosome translocations.
S4 670-907 Sentence denotes In addition, dual colour FISH analysis using centromere specific probes for chromosomes X and 17 showed that the breakpoints on both chromosomes lie within the alphoid arrays, making interruption of a locus on either chromosome unlikely.
S5 908-1197 Sentence denotes While partial variable monosomy of loci on chromosome 17p cannot be excluded as contributing to the phenotype in this patient, it is argued that the major likely factor is partial functional disomy of sequences on Xp in cell lineages that have failed to inactivate the intact X chromosome.

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 0-23 other_name denotes X inactivation analysis
T2 29-35 multi_cell denotes female
T3 41-54 other_name denotes hypomelanosis
T4 58-61 other_name denotes Ito
T5 80-107 DNA_domain_or_region denotes balanced X;17 translocation
T6 147-170 other_name denotes X inactivation analysis
T7 242-248 multi_cell denotes female
T8 254-267 other_name denotes hypomelanosis
T9 271-274 other_name denotes Ito
T10 293-330 DNA_domain_or_region denotes balanced whole arm X;17 translocation
T11 350-364 other_name denotes X inactivation
T12 403-404 DNA_molecule denotes X
T13 418-423 tissue denotes blood
T14 454-458 tissue denotes skin
T15 503-516 tissue denotes hypopigmented
T16 517-521 tissue denotes skin
T17 574-575 DNA_molecule denotes X
T18 618-639 other_name denotes phenotypic expression
T19 643-644 DNA_molecule denotes X
T20 683-708 other_name denotes dual colour FISH analysis
T21 758-759 DNA_molecule denotes X
T22 764-766 DNA_molecule denotes 17
T23 803-814 DNA_molecule denotes chromosomes
T24 830-844 other_name denotes alphoid arrays
T25 951-965 DNA_domain_or_region denotes chromosome 17p
T26 1122-1124 DNA_domain_or_region denotes Xp
T27 1184-1185 DNA_molecule denotes X

sentences

Id Subject Object Predicate Lexical cue
TextSentencer_T1 0-146 Sentence denotes X inactivation analysis in a female with hypomelanosis of Ito associated with a balanced X;17 translocation: evidence for functional disomy of Xp.
TextSentencer_T2 147-331 Sentence denotes X inactivation analysis was performed on normal and hypopigmented skin samples obtained from a female with hypomelanosis of Ito associated with a balanced whole arm X;17 translocation.
TextSentencer_T3 332-669 Sentence denotes Severe skewing of X inactivation resulting in inactivity of the intact X was found in blood and cultures of both types of skin, but analysis of DNA prepared directly from hypopigmented skin showed significant inactivation of the translocated X, inconsistent with the usual mechanism of phenotypic expression in X;autosome translocations.
TextSentencer_T4 670-907 Sentence denotes In addition, dual colour FISH analysis using centromere specific probes for chromosomes X and 17 showed that the breakpoints on both chromosomes lie within the alphoid arrays, making interruption of a locus on either chromosome unlikely.
TextSentencer_T5 908-1197 Sentence denotes While partial variable monosomy of loci on chromosome 17p cannot be excluded as contributing to the phenotype in this patient, it is argued that the major likely factor is partial functional disomy of sequences on Xp in cell lineages that have failed to inactivate the intact X chromosome.
T1 0-146 Sentence denotes X inactivation analysis in a female with hypomelanosis of Ito associated with a balanced X;17 translocation: evidence for functional disomy of Xp.
T2 147-331 Sentence denotes X inactivation analysis was performed on normal and hypopigmented skin samples obtained from a female with hypomelanosis of Ito associated with a balanced whole arm X;17 translocation.
T3 332-669 Sentence denotes Severe skewing of X inactivation resulting in inactivity of the intact X was found in blood and cultures of both types of skin, but analysis of DNA prepared directly from hypopigmented skin showed significant inactivation of the translocated X, inconsistent with the usual mechanism of phenotypic expression in X;autosome translocations.
T4 670-907 Sentence denotes In addition, dual colour FISH analysis using centromere specific probes for chromosomes X and 17 showed that the breakpoints on both chromosomes lie within the alphoid arrays, making interruption of a locus on either chromosome unlikely.
T5 908-1197 Sentence denotes While partial variable monosomy of loci on chromosome 17p cannot be excluded as contributing to the phenotype in this patient, it is argued that the major likely factor is partial functional disomy of sequences on Xp in cell lineages that have failed to inactivate the intact X chromosome.

UBERON-AE

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 308-311 http://purl.obolibrary.org/obo/UBERON_0001460 denotes arm
PD-UBERON-AE-B_T2 418-423 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood

PubCasesORDO

Id Subject Object Predicate Lexical cue
TI1 41-61 ORDO:435 denotes hypomelanosis of Ito
AB1 254-274 ORDO:435 denotes hypomelanosis of Ito

performance-test

Id Subject Object Predicate Lexical cue
PD-UBERON-AE-B_T1 418-423 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
PD-UBERON-AE-B_T2 308-311 http://purl.obolibrary.org/obo/UBERON_0001460 denotes arm