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PubMed:8570215 JSONTXT

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DisGeNET

Id Subject Object Predicate Lexical cue
T0 887-891 gene:8115 denotes TCL1
T1 925-928 disease:C0004135 denotes A-T
T2 887-891 gene:9623 denotes TCL1
T3 925-928 disease:C0004135 denotes A-T
T4 1453-1458 gene:4068 denotes MTCP1
T5 1400-1403 disease:C0004135 denotes A-T
T6 1453-1458 gene:100272147 denotes MTCP1
T7 1381-1386 disease:C2363142 denotes T-PLL
T8 1453-1458 gene:4068 denotes MTCP1
T9 1381-1386 disease:C2363142 denotes T-PLL
T10 1453-1458 gene:4515 denotes MTCP1
T11 1381-1386 disease:C2363142 denotes T-PLL
T12 1453-1458 gene:100272147 denotes MTCP1
T13 1400-1403 disease:C0004135 denotes A-T
T14 1326-1331 gene:4515 denotes MTCP1
T15 1542-1545 disease:C0004135 denotes A-T
T16 1453-1458 gene:4515 denotes MTCP1
T17 1400-1403 disease:C0004135 denotes A-T
T18 1453-1458 gene:100272147 denotes MTCP1
T19 1542-1545 disease:C0004135 denotes A-T
T20 1453-1458 gene:4068 denotes MTCP1
T21 1542-1545 disease:C0004135 denotes A-T
T22 1453-1458 gene:4515 denotes MTCP1
T23 1542-1545 disease:C0004135 denotes A-T
T24 1326-1331 gene:4068 denotes MTCP1
T25 1542-1545 disease:C0004135 denotes A-T
T26 1326-1331 gene:100272147 denotes MTCP1
T27 1542-1545 disease:C0004135 denotes A-T
R1 T0 T1 associated_with TCL1,A-T
R2 T2 T3 associated_with TCL1,A-T
R3 T4 T5 associated_with MTCP1,A-T
R4 T6 T7 associated_with MTCP1,T-PLL
R5 T8 T9 associated_with MTCP1,T-PLL
R6 T10 T11 associated_with MTCP1,T-PLL
R7 T12 T13 associated_with MTCP1,A-T
R8 T14 T15 associated_with MTCP1,A-T
R9 T16 T17 associated_with MTCP1,A-T
R10 T18 T19 associated_with MTCP1,A-T
R11 T20 T21 associated_with MTCP1,A-T
R12 T22 T23 associated_with MTCP1,A-T
R13 T24 T25 associated_with MTCP1,A-T
R14 T26 T27 associated_with MTCP1,A-T

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 25-38 DNA denotes TCL1 oncogene
T2 74-85 DNA denotes MTCP1/c6.1B
T3 104-125 cell_type denotes non-leukaemic T cells
T4 270-295 DNA denotes chromosome translocations
T5 328-346 cell_type denotes peripheral T cells
T6 424-430 cell_type denotes T cell
T7 444-463 cell_type denotes translocation cells
T8 748-752 protein denotes TCL1
T9 757-762 DNA denotes 14q32
T10 771-796 protein denotes c6.1B/MTCP1 A1 transcript
T11 798-805 DNA denotes at-Xq28
T12 887-891 protein denotes TCL1
T13 902-919 cell_type denotes leukaemic T cells
T14 943-956 DNA denotes chromosome 14
T15 987-991 protein denotes TCL1
T16 1011-1035 cell_type denotes preleukaemic clone cells
T17 1115-1119 protein denotes TCL1
T18 1292-1305 RNA denotes B1 transcript
T19 1326-1331 DNA denotes MTCP1
T20 1453-1472 RNA denotes MTCP1/A1 transcript
T21 1511-1538 cell_type denotes tumour and non tumour cells

DisGeNET5_gene_disease

Id Subject Object Predicate Lexical cue
8570215-8#70#75#gene4515 1326-1331 gene4515 denotes MTCP1
8570215-8#162#165#gene952 1418-1421 gene952 denotes t(X
8570215-8#197#202#gene4515 1453-1458 gene4515 denotes MTCP1
8570215-8#125#130#diseaseC0023486 1381-1386 diseaseC0023486 denotes T-PLL
8570215-8#286#289#diseaseC0004135 1542-1545 diseaseC0004135 denotes A-T
8570215-8#298#301#diseaseC0004135 1554-1557 diseaseC0004135 denotes A-T
8570215-8#125#130#diseaseC0023486 1381-1386 diseaseC0023486 denotes T-PLL
8570215-8#286#289#diseaseC0004135 1542-1545 diseaseC0004135 denotes A-T
8570215-8#298#301#diseaseC0004135 1554-1557 diseaseC0004135 denotes A-T
8570215-8#286#289#diseaseC0004135 1542-1545 diseaseC0004135 denotes A-T
8570215-8#298#301#diseaseC0004135 1554-1557 diseaseC0004135 denotes A-T
70#75#gene4515125#130#diseaseC0023486 8570215-8#70#75#gene4515 8570215-8#125#130#diseaseC0023486 associated_with MTCP1,T-PLL
70#75#gene4515286#289#diseaseC0004135 8570215-8#70#75#gene4515 8570215-8#286#289#diseaseC0004135 associated_with MTCP1,A-T
70#75#gene4515298#301#diseaseC0004135 8570215-8#70#75#gene4515 8570215-8#298#301#diseaseC0004135 associated_with MTCP1,A-T
70#75#gene4515125#130#diseaseC0023486 8570215-8#70#75#gene4515 8570215-8#125#130#diseaseC0023486 associated_with MTCP1,T-PLL
70#75#gene4515286#289#diseaseC0004135 8570215-8#70#75#gene4515 8570215-8#286#289#diseaseC0004135 associated_with MTCP1,A-T
70#75#gene4515298#301#diseaseC0004135 8570215-8#70#75#gene4515 8570215-8#298#301#diseaseC0004135 associated_with MTCP1,A-T
70#75#gene4515286#289#diseaseC0004135 8570215-8#70#75#gene4515 8570215-8#286#289#diseaseC0004135 associated_with MTCP1,A-T
70#75#gene4515298#301#diseaseC0004135 8570215-8#70#75#gene4515 8570215-8#298#301#diseaseC0004135 associated_with MTCP1,A-T
162#165#gene952125#130#diseaseC0023486 8570215-8#162#165#gene952 8570215-8#125#130#diseaseC0023486 associated_with t(X,T-PLL
162#165#gene952286#289#diseaseC0004135 8570215-8#162#165#gene952 8570215-8#286#289#diseaseC0004135 associated_with t(X,A-T
162#165#gene952298#301#diseaseC0004135 8570215-8#162#165#gene952 8570215-8#298#301#diseaseC0004135 associated_with t(X,A-T
162#165#gene952125#130#diseaseC0023486 8570215-8#162#165#gene952 8570215-8#125#130#diseaseC0023486 associated_with t(X,T-PLL
162#165#gene952286#289#diseaseC0004135 8570215-8#162#165#gene952 8570215-8#286#289#diseaseC0004135 associated_with t(X,A-T
162#165#gene952298#301#diseaseC0004135 8570215-8#162#165#gene952 8570215-8#298#301#diseaseC0004135 associated_with t(X,A-T
162#165#gene952286#289#diseaseC0004135 8570215-8#162#165#gene952 8570215-8#286#289#diseaseC0004135 associated_with t(X,A-T
162#165#gene952298#301#diseaseC0004135 8570215-8#162#165#gene952 8570215-8#298#301#diseaseC0004135 associated_with t(X,A-T
197#202#gene4515125#130#diseaseC0023486 8570215-8#197#202#gene4515 8570215-8#125#130#diseaseC0023486 associated_with MTCP1,T-PLL
197#202#gene4515286#289#diseaseC0004135 8570215-8#197#202#gene4515 8570215-8#286#289#diseaseC0004135 associated_with MTCP1,A-T
197#202#gene4515298#301#diseaseC0004135 8570215-8#197#202#gene4515 8570215-8#298#301#diseaseC0004135 associated_with MTCP1,A-T
197#202#gene4515125#130#diseaseC0023486 8570215-8#197#202#gene4515 8570215-8#125#130#diseaseC0023486 associated_with MTCP1,T-PLL
197#202#gene4515286#289#diseaseC0004135 8570215-8#197#202#gene4515 8570215-8#286#289#diseaseC0004135 associated_with MTCP1,A-T
197#202#gene4515298#301#diseaseC0004135 8570215-8#197#202#gene4515 8570215-8#298#301#diseaseC0004135 associated_with MTCP1,A-T
197#202#gene4515286#289#diseaseC0004135 8570215-8#197#202#gene4515 8570215-8#286#289#diseaseC0004135 associated_with MTCP1,A-T
197#202#gene4515298#301#diseaseC0004135 8570215-8#197#202#gene4515 8570215-8#298#301#diseaseC0004135 associated_with MTCP1,A-T

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-162 Sentence denotes Expression of either the TCL1 oncogene, or transcripts from its homologue MTCP1/c6.1B, in leukaemic and non-leukaemic T cells from ataxia telangiectasia patients.
S2 163-438 Sentence denotes Patients with the recessively inherited disorder ataxia telangiectasia (A-T) have a high level of specific chromosome translocations which can be easily observed in peripheral T cells and show a greatly increased predisposition to leukaemia/lymphoma, mainly of T cell origin.
S3 439-556 Sentence denotes Some translocation cells proliferate into a large clone and may develop into T cell prolymphocytic leukaemia (T-PLL).
S4 557-678 Sentence denotes By the time of diagnosis of T-PLL, the clone contains many more genetic changes in the form of additional translocations.
S5 679-853 Sentence denotes T-PLL is also seen in non-A-T individuals where expression of either TCL1 (at 14q32) or the c6.1B/MTCP1 A1 transcript (at-Xq28) has been demonstrated in just a few instances.
S6 854-972 Sentence denotes We show here, that expression of TCL1 occurs in leukaemic T cells from A-T patients with chromosome 14 rearrangements.
S7 973-1095 Sentence denotes Expression of TCL1 also occurs in the preleukaemic clone cells of A-T patients containing the primary translocation alone.
S8 1096-1255 Sentence denotes Some expression of TCL1 could also be detected in randomly selected A-T patients without large cytogenetic clones and without any evidence of leukaemic change.
S9 1256-1570 Sentence denotes We also show that expression of the B1 transcript from a second gene, MTCP1, occurred at a relatively high level only in two T-PLL tumours from A-T patients with t(X;14) translocations whereas the MTCP1/A1 transcript is much more widely expressed in both tumour and non tumour cells of A-T and non-A-T individuals.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C1 21-38 NP denotes the TCL1 oncogene
C2 60-63 NP denotes its
C3 163-244 NP denotes Patients with the recessively inherited disorder ataxia telangiectasia (A-T) have
C4 245-295 NP denotes a high level of specific chromosome translocations
C5 296-301 NP denotes which
C6 481-494 NP denotes a large clone
C7 516-555 NP denotes T cell prolymphocytic leukaemia (T-PLL)
C8 585-590 NP denotes T-PLL
C9 592-601 NP denotes the clone
C10 679-684 NP denotes T-PLL
C11 701-720 NP denotes non-A-T individuals
C12 721-726 NP denotes where
C13 748-752 NP denotes TCL1
C15 887-891 NP denotes TCL1
C14 873-891 NP denotes expression of TCL1
C16 925-937 NP denotes A-T patients
C18 987-991 NP denotes TCL1
C17 973-991 NP denotes Expression of TCL1
C19 1039-1094 NP denotes A-T patients containing the primary translocation alone
C20 1115-1119 NP denotes TCL1
C21 1311-1324 NP denotes a second gene
C22 1326-1331 NP denotes MTCP1
C23 1400-1440 NP denotes A-T patients with t(X;14) translocations
R1 C2 C1 coref-pron its,the TCL1 oncogene
R2 C5 C4 coref-relat which,a high level of specific chromosome translocations
R3 C8 C7 coref-ident T-PLL,T cell prolymphocytic leukaemia (T-PLL)
R4 C9 C6 coref-ident the clone,a large clone
R5 C10 C8 coref-ident T-PLL,T-PLL
R6 C12 C11 coref-relat where,non-A-T individuals
R7 C15 C13 coref-ident TCL1,TCL1
R8 C16 C3 coref-ident A-T patients,Patients with the recessively inherited disorder ataxia telangiectasia (A-T) have
R9 C18 C15 coref-ident TCL1,TCL1
R10 C17 C14 coref-ident Expression of TCL1,expression of TCL1
R11 C19 C16 coref-other A-T patients containing the primary translocation alone,A-T patients
R12 C20 C18 coref-ident TCL1,TCL1
R13 C22 C21 coref-appos MTCP1,a second gene
R14 C23 C19 coref-other A-T patients with t(X;14) translocations,A-T patients containing the primary translocation alone

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 25-38 DNA_domain_or_region denotes TCL1 oncogene
T2 74-85 DNA_domain_or_region denotes MTCP1/c6.1B
T3 104-125 cell_type denotes non-leukaemic T cells
T4 131-161 multi_cell denotes ataxia telangiectasia patients
T5 163-171 multi_cell denotes Patients
T6 212-233 other_name denotes ataxia telangiectasia
T7 235-238 other_name denotes A-T
T8 270-295 DNA_domain_or_region denotes chromosome translocations
T9 328-346 cell_type denotes peripheral T cells
T10 394-412 other_name denotes leukaemia/lymphoma
T11 424-430 cell_type denotes T cell
T12 444-463 cell_type denotes translocation cells
T13 516-547 other_name denotes T cell prolymphocytic leukaemia
T14 549-554 other_name denotes T-PLL
T15 585-590 other_name denotes T-PLL
T16 679-684 other_name denotes T-PLL
T17 701-705 multi_cell denotes non-
T18 705-708 other_name denotes A-T
T19 748-752 protein_molecule denotes TCL1
T20 757-762 DNA_domain_or_region denotes 14q32
T21 771-796 protein_molecule denotes c6.1B/MTCP1 A1 transcript
T22 798-805 DNA_domain_or_region denotes at-Xq28
T23 887-891 protein_molecule denotes TCL1
T24 902-919 cell_type denotes leukaemic T cells
T25 925-928 other_name denotes A-T
T26 943-956 DNA_molecule denotes chromosome 14
T27 987-991 protein_molecule denotes TCL1
T28 1011-1035 cell_type denotes preleukaemic clone cells
T29 1039-1042 other_name denotes A-T
T30 1115-1119 protein_molecule denotes TCL1
T31 1164-1167 other_name denotes A-T
T32 1292-1305 RNA_molecule denotes B1 transcript
T33 1326-1331 DNA_domain_or_region denotes MTCP1
T34 1381-1386 other_name denotes T-PLL
T35 1400-1403 other_name denotes A-T
T36 1453-1458 DNA_domain_or_region denotes MTCP1
T37 1542-1545 other_name denotes A-T
T38 1550-1554 multi_cell denotes non-
T39 1554-1557 other_name denotes A-T