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sentences

Id Subject Object Predicate Lexical cue
T1 0-102 Sentence denotes Solution structure of the sequence-specific HMG box of the lymphocyte transcriptional activator Sox-4.
T2 103-152 Sentence denotes Two groups of HMG box proteins are distinguished.
T3 153-315 Sentence denotes Proteins in the first group contain multiple HMG boxes, are non-sequence-specific, and recognize structural features as found in cruciform DNA and cross-over DNA.
T4 316-380 Sentence denotes The abundant chromosomal protein HMG-1 belongs to this subgroup.
T5 381-520 Sentence denotes Proteins in the second group carry a single HMG box with affinity for the minor groove of the heptamer motif AACAAAG or variations thereof.
T6 521-627 Sentence denotes A solution structure for the non-sequence-specific C-terminal HMG box of HMG-1 has recently been proposed.
T7 628-732 Sentence denotes Now, we report the solution structure of the sequence-specific HMG-box of the SRY-related protein Sox-4.
T8 733-894 Sentence denotes NMR analysis demonstrated the presence of three alpha-helices (Val10-Gln22, Glu30-Leu41 and Phe50-Tyr65) connected by loop regions (Ser23-Ala49 and Leu42-Pro49).
T9 895-983 Sentence denotes Helices I and II are positioned in an antiparallel mode and form one arm of the HMG box.
T10 984-1121 Sentence denotes Helix III is less rigid, makes an average angle of about 90 degrees with helices I and II, and constitutes the other arm of the molecule.
T11 1122-1260 Sentence denotes As in HMG1B, the overall structure of the Sox-4 HMG box is L-shaped and is maintained by a cluster of conserved, mainly aromatic residues.
T1 0-102 Sentence denotes Solution structure of the sequence-specific HMG box of the lymphocyte transcriptional activator Sox-4.
T2 103-152 Sentence denotes Two groups of HMG box proteins are distinguished.
T3 153-315 Sentence denotes Proteins in the first group contain multiple HMG boxes, are non-sequence-specific, and recognize structural features as found in cruciform DNA and cross-over DNA.
T4 316-380 Sentence denotes The abundant chromosomal protein HMG-1 belongs to this subgroup.
T5 381-520 Sentence denotes Proteins in the second group carry a single HMG box with affinity for the minor groove of the heptamer motif AACAAAG or variations thereof.
T6 521-627 Sentence denotes A solution structure for the non-sequence-specific C-terminal HMG box of HMG-1 has recently been proposed.
T7 628-732 Sentence denotes Now, we report the solution structure of the sequence-specific HMG-box of the SRY-related protein Sox-4.
T8 733-894 Sentence denotes NMR analysis demonstrated the presence of three alpha-helices (Val10-Gln22, Glu30-Leu41 and Phe50-Tyr65) connected by loop regions (Ser23-Ala49 and Leu42-Pro49).
T9 895-983 Sentence denotes Helices I and II are positioned in an antiparallel mode and form one arm of the HMG box.
T10 984-1121 Sentence denotes Helix III is less rigid, makes an average angle of about 90 degrees with helices I and II, and constitutes the other arm of the molecule.
T11 1122-1260 Sentence denotes As in HMG1B, the overall structure of the Sox-4 HMG box is L-shaped and is maintained by a cluster of conserved, mainly aromatic residues.

jnlpba-st-training

Id Subject Object Predicate Lexical cue
T1 26-51 DNA denotes sequence-specific HMG box
T2 59-95 protein denotes lymphocyte transcriptional activator
T3 96-101 protein denotes Sox-4
T4 117-133 protein denotes HMG box proteins
T5 198-207 protein denotes HMG boxes
T6 282-295 DNA denotes cruciform DNA
T7 300-314 DNA denotes cross-over DNA
T8 329-348 protein denotes chromosomal protein
T9 349-354 protein denotes HMG-1
T10 418-432 protein denotes single HMG box
T11 475-489 DNA denotes heptamer motif
T12 572-590 protein denotes C-terminal HMG box
T13 594-599 protein denotes HMG-1
T14 673-698 protein denotes sequence-specific HMG-box
T15 706-725 protein denotes SRY-related protein
T16 726-731 protein denotes Sox-4
T17 781-794 protein denotes alpha-helices
T18 796-807 protein denotes Val10-Gln22
T19 809-820 protein denotes Glu30-Leu41
T20 825-836 protein denotes Phe50-Tyr65
T21 851-863 protein denotes loop regions
T22 865-876 protein denotes Ser23-Ala49
T23 881-892 protein denotes Leu42-Pro49
T24 895-911 protein denotes Helices I and II
T25 933-950 protein denotes antiparallel mode
T26 975-982 protein denotes HMG box
T27 984-993 protein denotes Helix III
T28 1057-1073 protein denotes helices I and II
T29 1128-1133 protein denotes HMG1B
T30 1164-1169 protein denotes Sox-4
T31 1170-1177 protein denotes HMG box

pubmed-sentences-benchmark

Id Subject Object Predicate Lexical cue
S1 0-102 Sentence denotes Solution structure of the sequence-specific HMG box of the lymphocyte transcriptional activator Sox-4.
S2 103-152 Sentence denotes Two groups of HMG box proteins are distinguished.
S3 153-315 Sentence denotes Proteins in the first group contain multiple HMG boxes, are non-sequence-specific, and recognize structural features as found in cruciform DNA and cross-over DNA.
S4 316-380 Sentence denotes The abundant chromosomal protein HMG-1 belongs to this subgroup.
S5 381-520 Sentence denotes Proteins in the second group carry a single HMG box with affinity for the minor groove of the heptamer motif AACAAAG or variations thereof.
S6 521-627 Sentence denotes A solution structure for the non-sequence-specific C-terminal HMG box of HMG-1 has recently been proposed.
S7 628-732 Sentence denotes Now, we report the solution structure of the sequence-specific HMG-box of the SRY-related protein Sox-4.
S8 733-894 Sentence denotes NMR analysis demonstrated the presence of three alpha-helices (Val10-Gln22, Glu30-Leu41 and Phe50-Tyr65) connected by loop regions (Ser23-Ala49 and Leu42-Pro49).
S9 895-983 Sentence denotes Helices I and II are positioned in an antiparallel mode and form one arm of the HMG box.
S10 984-1121 Sentence denotes Helix III is less rigid, makes an average angle of about 90 degrees with helices I and II, and constitutes the other arm of the molecule.
S11 1122-1260 Sentence denotes As in HMG1B, the overall structure of the Sox-4 HMG box is L-shaped and is maintained by a cluster of conserved, mainly aromatic residues.

genia-medco-coref

Id Subject Object Predicate Lexical cue
C2 22-101 NP denotes the sequence-specific HMG box of the lymphocyte transcriptional activator Sox-4
C1 0-101 NP denotes Solution structure of the sequence-specific HMG box of the lymphocyte transcriptional activator Sox-4
C3 165-180 NP denotes the first group
C4 316-354 NP denotes The abundant chromosomal protein HMG-1
C5 366-379 NP denotes this subgroup
C6 594-599 NP denotes HMG-1
C8 669-731 NP denotes the sequence-specific HMG-box of the SRY-related protein Sox-4
C7 643-731 NP denotes the solution structure of the sequence-specific HMG-box of the SRY-related protein Sox-4
C9 895-911 NP denotes Helices I and II
C10 1057-1073 NP denotes helices I and II
C11 1160-1177 NP denotes the Sox-4 HMG box
R1 C5 C3 coref-ident this subgroup,the first group
R2 C6 C4 coref-ident HMG-1,The abundant chromosomal protein HMG-1
R3 C8 C2 coref-ident the sequence-specific HMG-box of the SRY-related protein Sox-4,the sequence-specific HMG box of the lymphocyte transcriptional activator Sox-4
R4 C7 C1 coref-ident the solution structure of the sequence-specific HMG-box of the SRY-related protein Sox-4,Solution structure of the sequence-specific HMG box of the lymphocyte transcriptional activator Sox-4
R5 C10 C9 coref-ident helices I and II,Helices I and II
R6 C11 C8 coref-ident the Sox-4 HMG box,the sequence-specific HMG-box of the SRY-related protein Sox-4

GENIAcorpus

Id Subject Object Predicate Lexical cue
T1 26-51 DNA_domain_or_region denotes sequence-specific HMG box
T2 59-95 protein_family_or_group denotes lymphocyte transcriptional activator
T3 96-101 protein_molecule denotes Sox-4
T4 117-133 protein_molecule denotes HMG box proteins
T5 198-207 protein_domain_or_region denotes HMG boxes
T6 213-234 other_name denotes non-sequence-specific
T7 282-295 DNA_family_or_group denotes cruciform DNA
T8 300-314 DNA_family_or_group denotes cross-over DNA
T9 329-348 protein_family_or_group denotes chromosomal protein
T10 349-354 protein_molecule denotes HMG-1
T11 418-432 protein_domain_or_region denotes single HMG box
T12 455-467 DNA_substructure denotes minor groove
T13 475-489 DNA_domain_or_region denotes heptamer motif
T14 490-497 polynucleotide denotes AACAAAG
T15 572-590 protein_domain_or_region denotes C-terminal HMG box
T16 594-599 protein_molecule denotes HMG-1
T17 673-698 protein_domain_or_region denotes sequence-specific HMG-box
T18 706-725 protein_family_or_group denotes SRY-related protein
T19 726-731 protein_molecule denotes Sox-4
T20 733-745 other_name denotes NMR analysis
T21 796-807 protein_domain_or_region denotes Val10-Gln22
T22 809-820 protein_domain_or_region denotes Glu30-Leu41
T23 825-836 protein_domain_or_region denotes Phe50-Tyr65
T24 865-876 protein_domain_or_region denotes Ser23-Ala49
T25 881-892 protein_domain_or_region denotes Leu42-Pro49
T26 975-982 protein_domain_or_region denotes HMG box
T27 1128-1133 protein_molecule denotes HMG1B
T28 1164-1169 protein_molecule denotes Sox-4
T29 1170-1177 protein_domain_or_region denotes HMG box
T30 1242-1259 peptide denotes aromatic residues

Anatomy-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 59-69 Body_part denotes lymphocyte http://purl.obolibrary.org/obo/CL_0000542
T2 461-467 Body_part denotes groove http://purl.obolibrary.org/obo/UBERON_0004704|http://purl.obolibrary.org/obo/UBERON_0006846|http://purl.obolibrary.org/obo/UBERON_0014764
T5 964-967 Body_part denotes arm http://purl.obolibrary.org/obo/UBERON_0001460|http://purl.obolibrary.org/obo/UBERON_0003822
T7 984-989 Body_part denotes Helix http://purl.obolibrary.org/obo/UBERON_0002488
T8 1101-1104 Body_part denotes arm http://purl.obolibrary.org/obo/UBERON_0001460|http://purl.obolibrary.org/obo/UBERON_0003822

CL-cell

Id Subject Object Predicate Lexical cue cl_id
T1 59-69 Cell denotes lymphocyte http://purl.obolibrary.org/obo/CL:0000542